Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,957,507	T→C	S460G (AGC→GGC)	ptrA ←	protease 3

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,957,507	0	T	C	100.0%	331.4 / NA	87	S460G (AGC→GGC)	ptrA	protease 3
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/47);  total (40/47)

AGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCATGGTATCTGCCAG  >  NC_000913/2957370‑2957642                                                                                                                                          |                                                                                                                                        aGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGa                                                                                                                                       <  2:679248/140‑1 (MQ=255) aGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGa                                                                                                                                       >  1:1047782/1‑140 (MQ=255) aGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGa                                                                                                                                       <  1:129788/140‑1 (MQ=255)    gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGatat                                                                                                                                    >  1:462889/1‑140 (MQ=255)    gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGatat                                                                                                                                    >  1:1468703/1‑140 (MQ=255)    gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGatat                                                                                                                                    <  1:737919/140‑1 (MQ=255)    gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGACGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGatat                                                                                                                                    >  1:1165207/1‑140 (MQ=255)      tAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATAc                                                                                                                                  <  1:1118072/140‑1 (MQ=255)       aaGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATAcc                                                                                                                                 >  2:1441623/1‑140 (MQ=255)       aaGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATAcc                                                                                                                                 >  1:277959/1‑140 (MQ=255)       aaGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATAcc                                                                                                                                 >  1:844971/1‑140 (MQ=255)       aaGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATAcc                                                                                                                                 >  2:236930/1‑140 (MQ=255)          ctctGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGa                                                                                                                              <  2:1309385/140‑1 (MQ=255)          ctctGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGa                                                                                                                              <  2:574364/140‑1 (MQ=255)             tGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATAc                                                                                                                           >  1:206753/1‑140 (MQ=255)                         cgcAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTgcg                                                                                                               >  2:264263/1‑140 (MQ=255)                         cgcAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTgcg                                                                                                               >  1:681498/1‑140 (MQ=255)                         cgcAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTgcg                                                                                                               >  2:800280/1‑140 (MQ=255)                         cgcAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTgcg                                                                                                               >  2:80160/1‑140 (MQ=255)                         cgcAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTgcg                                                                                                               >  2:809161/1‑140 (MQ=255)                         cgcAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTgcg                                                                                                               >  1:1468880/1‑140 (MQ=255)                         cgcAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTgcg                                                                                                               >  2:1010218/1‑140 (MQ=255)                         cgcAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTgcg                                                                                                               >  2:308190/1‑140 (MQ=255)                            aaTGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTgcggcg                                                                                                            <  1:721496/140‑1 (MQ=255)                               gTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGtca                                                                                                         <  2:589542/140‑1 (MQ=255)                                tCGGCAGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATAGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATCCCAGATACGCGCATTCTGCGGCGtcat                                                                                                        <  2:258090/140‑1 (MQ=255)                                        ttttttCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCa                                                                                                <  1:1048674/140‑1 (MQ=255)                                         tttttCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAg                                                                                               >  2:1420054/1‑140 (MQ=255)                                          ttttCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGa                                                                                              <  1:695787/140‑1 (MQ=255)                                          ttttCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGa                                                                                              <  2:76039/140‑1 (MQ=255)                                          ttttCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGa                                                                                              >  2:359005/1‑140 (MQ=255)                                             tCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGt                                                                                           <  2:1345435/140‑1 (MQ=255)                                                   aGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCttt                                                                                     <  2:784911/140‑1 (MQ=255)                                                   aGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCttt                                                                                     <  1:1441623/140‑1 (MQ=255)                                                   aGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCttt                                                                                     <  2:401369/140‑1 (MQ=255)                                                   aGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCttt                                                                                     <  2:829794/140‑1 (MQ=255)                                                   aGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCttt                                                                                     <  2:416369/140‑1 (MQ=255)                                                    gTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTa                                                                                    <  1:308190/140‑1 (MQ=255)                                                    gTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTa                                                                                    <  1:1439023/140‑1 (MQ=255)                                                    gTCGACGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTa                                                                                    <  2:1165207/140‑1 (MQ=255)                                                     tCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTAc                                                                                   <  1:792475/140‑1 (MQ=255)                                                             aGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAg                                                                           <  2:1216111/140‑1 (MQ=255)                                                               tttGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCa                                                                         <  2:1468880/140‑1 (MQ=255)                                                               tttGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCa                                                                         <  2:1047137/140‑1 (MQ=255)                                                               tttGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCa                                                                         <  1:389222/140‑1 (MQ=255)                                                               attGTGCGCTGATTTAATCGACCTGATTCGGCGCATCGACAAAGTAGGCAGTTTTGTTGGGCGGCTCTTCCGGGCCGATATACCAGATACGCGCATTCTGCGGTGTCATCATCGCCAGACGTTTCTTTACTGCTTTAGCa                                                                         <  2:383357/139‑1 (MQ=255)                                                                    gcgcTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTa                                                                    <  2:462889/140‑1 (MQ=255)                                                                    gcgcTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTa                                                                    <  1:1010218/140‑1 (MQ=255)                                                                     cgcTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTAc                                                                   <  1:80160/140‑1 (MQ=255)                                                                     cgcTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTAc                                                                   <  1:395697/140‑1 (MQ=255)                                                                     cgcTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTAc                                                                   <  2:594922/140‑1 (MQ=255)                                                                        tGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGa                                                                >  1:112890/1‑140 (MQ=255)                                                                                  gACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAatat                                                      <  1:1420054/140‑1 (MQ=255)                                                                                    ccTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTg                                                    >  2:1016208/1‑140 (MQ=255)                                                                                    ccTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTg                                                    >  2:418976/1‑140 (MQ=255)                                                                                    ccTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTg                                                    >  2:1506942/1‑140 (MQ=255)                                                                                       gATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACt                                                 <  1:967688/140‑1 (MQ=255)                                                                                              cgcATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCa                                          >  2:991642/1‑140 (MQ=255)                                                                                              cgcATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCa                                          >  1:1476680/1‑140 (MQ=255)                                                                                              cgcATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCa                                          >  2:1247044/1‑140 (MQ=255)                                                                                              cgcATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCa                                          >  1:317340/1‑140 (MQ=255)                                                                                              cgcATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCa                                          >  1:383571/1‑140 (MQ=255)                                                                                              cgcATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCa                                          >  1:814188/1‑140 (MQ=255)                                                                                              cgcATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGACCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCa                                          >  1:84828/1‑140 (MQ=255)                                                                                                cATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGc                                        <  1:264263/140‑1 (MQ=255)                                                                                                  tCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGt                                      >  1:1183031/1‑140 (MQ=255)                                                                                                  tCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGt                                      <  2:1178401/140‑1 (MQ=255)                                                                                                  tCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGt                                      >  1:551747/1‑140 (MQ=255)                                                                                                   cGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTa                                     <  2:844971/140‑1 (MQ=255)                                                                                                   cGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTa                                     <  1:973346/140‑1 (MQ=255)                                                                                                     aCAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATg                                   <  2:1183031/140‑1 (MQ=255)                                                                                                              gCCGTTTTGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAgg                          >  2:826888/1‑140 (MQ=255)                                                                                                                  ttttGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAAcg                      <  2:1459155/140‑1 (MQ=255)                                                                                                                   tttGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAAcgc                     <  1:800280/140‑1 (MQ=255)                                                                                                                   tttGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAAcgc                     <  1:231524/140‑1 (MQ=255)                                                                                                                   tttGTTGTGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAAcgc                     >  2:1253488/1‑140 (MQ=255)                                                                                                                     tgttgtGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGa                   <  2:497282/140‑1 (MQ=255)                                                                                                                     tgttgtGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGa                   >  2:872760/1‑140 (MQ=255)                                                                                                                     tgttgtGCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGa                   >  1:226505/1‑140 (MQ=255)                                                                                                                         gtgCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCa               <  2:1226700/140‑1 (MQ=255)                                                                                                                         gtgCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCa               >  2:711492/1‑140 (MQ=255)                                                                                                                         gtgCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCa               <  2:820976/140‑1 (MQ=255)                                                                                                                           gCGGCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCATg             >  1:1469054/1‑140 (MQ=255)                                                                                                                             ggCTCTTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCATGGt           <  2:958726/140‑1 (MQ=255)                                                                                                                               ctctTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCATGGTAt         >  1:1047426/1‑140 (MQ=255)                                                                                                                               ctctTTCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCATGGTAt         >  2:1452750/1‑140 (MQ=255)                                                                                                                                    tCGGGCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCATGGTATCTgcc    <  1:687048/140‑1 (MQ=255)                                                                                                                                      gggCCGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCATGGTATCTgccag  <  1:236930/140‑1 (MQ=255)                                                                                                                                          |                                                                                                                                        AGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTGCGGCGTCATCATCGCCAGACGTTCCTTTACTGCTTTAGCATCGTACCGATCGGCAATATTGACTGCATCCAGCGTATGCTCAACAGGAACGCGAATCATGGTATCTGCCAG  >  NC_000913/2957370‑2957642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑