| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,020,252 | (A)8→7 | intergenic (‑199/+158) | ompA ← / ← sulA | outer membrane porin A/cell division inhibitor SulA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,020,245 | 0 | A | . | 97.1% | 141.7 / ‑1.9 | 35 | intergenic (‑192/+165) | ompA/sulA | outer membrane porin A/cell division inhibitor SulA |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (18/16); total (19/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCAAGGAAAATTAGTCACGACTG > NC_000913/1020114‑1020358 | tAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaagt < 2:268819/140‑3 (MQ=255)tAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCAATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaagt < 2:452320/140‑3 (MQ=255) aaaTCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaagtc < 2:1051765/140‑4 (MQ=255) aaaTCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaagtc < 1:333757/140‑4 (MQ=255) aaaTCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaagtc < 2:511672/140‑4 (MQ=255) aaaTCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaagtc < 2:68313/140‑4 (MQ=255) cACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATaa > 1:254615/1‑140 (MQ=255) cACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATaa > 2:308741/1‑140 (MQ=255) ccGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAgg < 1:307730/140‑1 (MQ=255) aCTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAg > 1:756259/1‑140 (MQ=255) ctACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGa < 2:756259/140‑1 (MQ=255) ctACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGa < 2:254615/140‑1 (MQ=255) aCCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACa > 2:477164/1‑140 (MQ=255) aCCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACa > 1:360075/1‑140 (MQ=255) aCCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACa > 1:470020/1‑140 (MQ=255) aCCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACa > 1:382809/1‑140 (MQ=255) aCCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCGTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACa > 1:647548/1‑140 (MQ=255) tatCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTa < 2:670846/140‑1 (MQ=255) gAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGa < 1:722091/140‑1 (MQ=255) gCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGaaa < 1:308741/140‑1 (MQ=255) gCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGaaa < 2:219553/140‑1 (MQ=255) cACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAAc < 2:360075/140‑1 (MQ=255) cccTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGc > 1:452683/1‑140 (MQ=255) cccTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGc > 2:552891/1‑140 (MQ=255) ccTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCt < 2:808399/140‑1 (MQ=255) cTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCtt > 1:769961/1‑140 (MQ=255) tGGCGATGTAAAGTCTACAGCGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTc < 1:956787/140‑1 (MQ=255) aTGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACa < 2:382809/140‑1 (MQ=255) gTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGGTTAATCTTTGTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAg > 2:948838/1‑140 (MQ=255) gTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTcc < 1:477164/140‑1 (MQ=255) aCAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGa < 2:4544/127‑1 (MQ=255) aCAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGa > 1:4544/1‑127 (MQ=255) aCAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCaa > 1:707931/1‑140 (MQ=255) aCAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCaa > 1:566648/1‑140 (MQ=255) aCAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCaa > 2:78516/1‑140 (MQ=255) tAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCAAGGa < 2:272193/137‑1 (MQ=255) tAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCAAGGa > 1:272193/1‑137 (MQ=255) aGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCAAGGaaaa > 2:560777/1‑140 (MQ=255) aGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCAAGGAAAAt > 1:262549/1‑140 (MQ=255) aCAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCAAGGAAAATTAGTCACGACTg < 2:452683/140‑1 (MQ=255) aCAAGTGTGAACTCCGTCAGGCATATG‑AAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCAAGGAAAATTAGTCACGACTg < 1:352864/140‑1 (MQ=255) | TAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAGAGAATCGCGGAAACCGCTTCAGACAAGCCTCCGCAAGGAAAATTAGTCACGACTG > NC_000913/1020114‑1020358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |