Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,990,923	(C)6→7	pseudogene (370/490 nt)	ygeF →	protein YgeF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,990,917	1	.	C	98.7%	294.8 / ‑3.8	79	pseudogene (364/490 nt)	ygeF	protein YgeF
Reads supporting (aligned to +/- strand):  ref base . (0/1);  new base C (44/34);  total (44/35)
Fisher's exact test for biased strand distribution p-value = 4.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

TATGAGCATATATAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑T‑CCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAGGCATTT  >  NC_000913/2990787‑2991050                                                                                                                                     |                                                                                                                                      tATGAGCATATATAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑T‑cccccccgc                                                                                                                              >  1:426037/1‑137 (MQ=255)   tGAGCATATATAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑T‑cccccccgcgt                                                                                                                            >  2:486685/1‑135 (MQ=255)     aGCATATATAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCa                                                                                                                           <  1:611/140‑1 (MQ=255)     aGCATATATAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCa                                                                                                                           <  1:486685/140‑1 (MQ=255)     aGCATATATAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCa                                                                                                                           >  1:833138/1‑140 (MQ=255)      gCATATATAAATTTTCGATAACAGATGATTTATTGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCAc                                                                                                                          <  2:919977/140‑1 (MQ=255)       cATATATAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCAcc                                                                                                                         <  2:395051/140‑1 (MQ=255)       cATATATAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCAcc                                                                                                                         <  2:316733/140‑1 (MQ=255)        atatatAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCa                                                                                                                        >  1:1043170/1‑140 (MQ=255)            ataAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACa                                                                                                                    >  2:760850/1‑140 (MQ=255)                 ttttCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACataata                                                                                                               >  2:668023/1‑140 (MQ=255)                    tCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAg                                                                                                            >  1:1038059/1‑140 (MQ=255)                             gatgatTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAaaaca                                                                                                   <  2:426037/140‑1 (MQ=255)                              atgatTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAaaacaa                                                                                                  >  1:887211/1‑140 (MQ=255)                                 atTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACg                                                                                               <  1:358287/140‑1 (MQ=255)                                 atTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACg                                                                                               <  2:241802/140‑1 (MQ=255)                                 atTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACg                                                                                               <  1:760850/140‑1 (MQ=255)                                 atTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACg                                                                                               <  1:992281/140‑1 (MQ=255)                                    tAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACa                                                                                            <  1:1044428/140‑1 (MQ=255)                                       tGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTc                                                                                         >  2:661655/1‑140 (MQ=255)                                        gAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACTGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCt                                                                                        >  2:929701/1‑140 (MQ=255)                                           tATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACg                                                                                               >  2:1039790/1‑130 (MQ=255)                                           tATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACg                                                                                               <  1:1039790/130‑1 (MQ=255)                                            aTGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTAccc                                                                                    >  1:587559/1‑140 (MQ=255)                                                   tAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCaa                                                                             >  2:607916/1‑140 (MQ=255)                                                     aaTGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCaaaa                                                                           >  2:117670/1‑140 (MQ=255)                                                                        ccAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCa                                                        >  1:898632/1‑140 (MQ=255)                                                                        ccAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCa                                                        >  2:506125/1‑140 (MQ=255)                                                                        ccAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCa                                                        >  2:896581/1‑140 (MQ=255)                                                                            aaTAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGa                                                    >  2:318435/1‑140 (MQ=255)                                                                                   aataatGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGaaaaaa                                               >  2:634744/1‑138 (MQ=255)                                                                                   aataatGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGaaaaaa                                               <  1:634744/138‑1 (MQ=255)                                                                                   aataatGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATg                                             <  1:607916/140‑1 (MQ=255)                                                                                   aataatGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATg                                             <  1:668023/140‑1 (MQ=255)                                                                                   aataatGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATg                                             <  1:661655/140‑1 (MQ=255)                                                                                      aatGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCa                                          >  2:822268/1‑140 (MQ=255)                                                                                        tGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAAt                                        >  2:896977/1‑140 (MQ=255)                                                                                        tGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAAt                                        <  2:532150/140‑1 (MQ=255)                                                                                         gTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAAtt                                       <  2:579798/140‑1 (MQ=255)                                                                                          tAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTg                                      >  1:1011900/1‑140 (MQ=255)                                                                                           aGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGa                                     <  1:822268/140‑1 (MQ=255)                                                                                           aGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTG‑AAAAATGGCAATTGAt                                    <  2:587559/140‑1 (MQ=255)                                                                                             aCCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTGATTGAAAAAATGGCAATTGATa                                   >  1:750258/1‑140 (MQ=255)                                                                                               cTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACt                                 >  2:200493/1‑140 (MQ=255)                                                                                               cTGAATAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACt                                 >  2:267430/1‑140 (MQ=255)                                                                                                  aaTAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGa                                     >  1:298526/1‑133 (MQ=255)                                                                                                  aaTAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGa                                     <  2:298526/133‑1 (MQ=255)                                                                                                  aaTAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATg                              >  1:209990/1‑140 (MQ=255)                                                                                                  aaTAAATTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATg                              >  1:604893/1‑140 (MQ=255)                                                                                                      aaTTCACTACTATATGCACAGACGTTCTACC‑CCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGACTc                          <  1:200493/140‑1 (MQ=255)                                                                                                       aTTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATcc                         <  2:1043170/140‑1 (MQ=255)                                                                                                       aTTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATcc                         <  2:898632/140‑1 (MQ=255)                                                                                                       aTTCACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATcc                         <  1:896977/140‑1 (MQ=255)                                                                                                          cACTACTATATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAgg                      <  2:750258/140‑1 (MQ=255)                                                                                                            ctactaTATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTc                    >  2:37034/1‑140 (MQ=255)                                                                                                            ctactaTATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTc                    >  1:637961/1‑140 (MQ=255)                                                                                                               ctaTATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATa                 <  2:887211/140‑1 (MQ=255)                                                                                                               ctaTATGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATa                 <  1:318435/140‑1 (MQ=255)                                                                                                                  tatGCACAGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATacac              >  1:1001331/1‑140 (MQ=255)                                                                                                                      cacaGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTa          >  1:872434/1‑140 (MQ=255)                                                                                                                       acaGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTaa         <  1:37034/140‑1 (MQ=255)                                                                                                                       acaGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTaa         <  2:637961/140‑1 (MQ=255)                                                                                                                         aGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTaa         >  1:831106/1‑138 (MQ=255)                                                                                                                         aGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTaa         <  2:831106/138‑1 (MQ=255)                                                                                                                         aGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAgg       >  1:825443/1‑140 (MQ=255)                                                                                                                         aGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAgg       >  2:1012006/1‑140 (MQ=255)                                                                                                                         aGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAgg       <  2:124848/140‑1 (MQ=255)                                                                                                                         aGACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAgg       >  2:658606/1‑140 (MQ=255)                                                                                                                          gACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTaa         >  2:668100/1‑137 (MQ=255)                                                                                                                          gACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTaa         <  1:668100/137‑1 (MQ=255)                                                                                                                          gACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAGGc      >  2:709719/1‑140 (MQ=255)                                                                                                                          gACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAGGc      >  2:838729/1‑140 (MQ=255)                                                                                                                          gACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAGGc      >  1:155920/1‑140 (MQ=255)                                                                                                                          gACGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAGGc      >  1:1034999/1‑140 (MQ=255)                                                                                                                           aCGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATa                 <  2:745718/128‑1 (MQ=255)                                                                                                                           aCGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATa                 >  1:745718/1‑128 (MQ=255)                                                                                                                           aCGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAgg       <  1:226381/138‑1 (MQ=255)                                                                                                                           aCGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAgg       >  2:226381/1‑138 (MQ=255)                                                                                                                           aCGTTCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAGGCa     >  2:139293/1‑140 (MQ=255)                                                                                                                              ttCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAGGCAttt  >  2:627445/1‑140 (MQ=255)                                                                                                                              ttCTA‑TCCCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAGGCAttt  >  2:1042253/1‑140 (MQ=255)                                                                                                                                     |                                                                                                                                      TATGAGCATATATAAATTTTCGATAACAGATGATTTAATGAGTATGGCTGTAAATGAACTCATAAAACTGACCAAAATAGAGAATAATGTAGACCTGAATAAATTCACTACTATATGCACAGACGTTCTA‑T‑CCCCCCGCGTCACCAGACATAATAAAGAAAAAAACAAACGACATTCTACCCTTCTCAAAAATCCCCTTTTTAATTTTCATTGAAAAAATGGCAATTGATACTATGAATCCAGGTCATACACATTAAGGCATTT  >  NC_000913/2990787‑2991050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑