Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	271,958	C→T	pseudogene (195/427 nt)	insN →	CP4‑6 prophage; IS911A regulator fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	271,958	0	C	T	100.0%	255.4 / NA	71	pseudogene (195/427 nt)	insN	CP4‑6 prophage; IS911A regulator fragment
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (30/41);  total (30/41)

TCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGCCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCACCGGTATAA  >  NC_000913/271826‑272092                                                                                                                                     |                                                                                                                                       tCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGct                                                                                                                                 <  2:75676/140‑1 (MQ=255)      tgGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGcc                                                                                                                            >  1:427849/1‑140 (MQ=255)        gCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCgg                                                                                                                          >  1:988197/1‑140 (MQ=255)            ctctctGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCa                                                                                                                      >  1:166561/1‑140 (MQ=255)             tctctGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCaa                                                                                                                     >  1:837532/1‑140 (MQ=255)                ctGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCaagaa                                                                                                                  >  1:939410/1‑140 (MQ=255)                  gCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGACATCAGTCACGGCTCTGCCGGAGCAAGAAGc                                                                                                                <  1:636639/140‑1 (MQ=255)                   ccATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCa                                                                                                               >  2:558905/1‑140 (MQ=255)                    cATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCAt                                                                                                              <  1:318987/140‑1 (MQ=255)                    cATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCAt                                                                                                              <  1:665974/140‑1 (MQ=255)                        tgtTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGcc                                                                                                          >  2:13351/1‑140 (MQ=255)                        tgtTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGcc                                                                                                          >  2:891639/1‑140 (MQ=255)                         gtTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCca                                                                                                         >  1:447098/1‑140 (MQ=255)                          ttCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCcac                                                                                                        <  2:908625/140‑1 (MQ=255)                          ttCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCcac                                                                                                        <  2:166561/140‑1 (MQ=255)                            cGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACaa                                                                                                      <  1:220420/140‑1 (MQ=255)                               ggTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATgg                                                                                                   <  2:988197/140‑1 (MQ=255)                               ggTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATgg                                                                                                   >  1:921801/1‑140 (MQ=255)                                 ttCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCa                                                                                                 <  2:447098/140‑1 (MQ=255)                                  tCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATgg                                                                                                   <  1:1047595/137‑1 (MQ=255)                                  tCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATgg                                                                                                   >  2:1047595/1‑137 (MQ=255)                                  tCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGc                                                                                                  >  2:655791/1‑138 (MQ=255)                                  tCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGc                                                                                                  <  1:655791/138‑1 (MQ=255)                                      cGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCa                                                                                            <  2:630853/140‑1 (MQ=255)                                      cGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCa                                                                                            <  2:235260/140‑1 (MQ=255)                                      cGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCa                                                                                            <  2:211536/140‑1 (MQ=255)                                        cagcagCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCaga                                                                                          <  2:994663/140‑1 (MQ=255)                                        cagcagCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCaga                                                                                          <  2:427849/140‑1 (MQ=255)                                          gcagcTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCagaga                                                                                        <  2:525306/140‑1 (MQ=255)                                           cagcTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCagagag                                                                                       <  2:837532/140‑1 (MQ=255)                                            agcTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAgg                                                                                      <  1:649883/140‑1 (MQ=255)                                                      aCTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATg                                                                            <  2:271217/140‑1 (MQ=255)                                                      aCTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATg                                                                            >  2:245786/1‑140 (MQ=255)                                                        tGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATggg                                                                          >  2:405770/1‑140 (MQ=255)                                                        tGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATggg                                                                          >  1:335914/1‑140 (MQ=255)                                                                 cGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCt                                                                 <  1:245786/140‑1 (MQ=255)                                                                    ccTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGc                                                              >  1:542960/1‑140 (MQ=255)                                                                         aaaGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCa                                                         <  2:127980/140‑1 (MQ=255)                                                                         aaaGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCa                                                         <  1:405770/140‑1 (MQ=255)                                                                          aaGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAg                                                        <  2:290895/140‑1 (MQ=255)                                                                           aGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCTTGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGa                                                       <  2:942707/140‑1 (MQ=255)                                                                                gacggcagacggGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCAt                                                  >  1:620370/1‑140 (MQ=255)                                                                                   ggcagacggGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGaa                                               <  2:849451/140‑1 (MQ=255)                                                                                             cTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTgggg                                     <  1:728482/140‑1 (MQ=255)                                                                                               gTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCt                                   <  2:542960/140‑1 (MQ=255)                                                                                               gTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCt                                   <  1:558905/140‑1 (MQ=255)                                                                                                    aCGCAGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCa                              >  1:721008/1‑140 (MQ=255)                                                                                                        aGTCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTg                          >  2:486577/1‑140 (MQ=255)                                                                                                          tCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGcc                        >  1:991263/1‑140 (MQ=255)                                                                                                          tCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGcc                        >  2:421102/1‑140 (MQ=255)                                                                                                          tCAGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGcc                        >  2:608921/1‑140 (MQ=255)                                                                                                            aGGTACTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCcag                      >  2:451381/1‑140 (MQ=255)                                                                                                                aCTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCagcagc                  <  2:628171/140‑1 (MQ=255)                                                                                                                aCTTGAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCagcagc                  <  1:860919/140‑1 (MQ=255)                                                                                                                    gAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGAc              <  2:548497/140‑1 (MQ=255)                                                                                                                    gAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGAc              >  1:920088/1‑140 (MQ=255)                                                                                                                    gAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGAc              <  2:317259/140‑1 (MQ=255)                                                                                                                    gAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGAc              >  1:548497/1‑140 (MQ=255)                                                                                                                    gAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGAc              >  1:752339/1‑140 (MQ=255)                                                                                                                    gAACTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGAc              >  1:777862/1‑140 (MQ=255)                                                                                                                      aCTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTc            <  2:309620/140‑1 (MQ=255)                                                                                                                       cTGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCa           <  1:421102/140‑1 (MQ=255)                                                                                                                        tGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCAc          <  1:231718/140‑1 (MQ=255)                                                                                                                        tGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCAc          <  1:258172/140‑1 (MQ=255)                                                                                                                        tGCATGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCAc          <  2:335914/140‑1 (MQ=255)                                                                                                                          taTGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCACCg        <  2:530720/139‑1 (MQ=255)                                                                                                                           aTGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCACCgg       <  2:139412/140‑1 (MQ=255)                                                                                                                           aTGGCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGCATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCACCgg       >  2:946873/1‑140 (MQ=255)                                                                                                                             ggCATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCACCGGta     <  2:721008/140‑1 (MQ=255)                                                                                                                               cATCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCACCGGtata   >  1:416178/1‑140 (MQ=255)                                                                                                                                aTCAGTCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCACCGGTATaa  >  1:315254/1‑140 (MQ=255)                                                                                                                                     |                                                                                                                                       TCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCATGGCATCAGCCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCAGAGAGGATACCAGATGGGGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCACCGGTATAA  >  NC_000913/271826‑272092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑