BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,632,730	T→C	intergenic (‑445/‑160)	ydfJ ← / → ynfT	putative transporter YdfJ/Qin prophage; protein YnfT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,632,730	0	T	C	100.0%	432.4 / NA	119	intergenic (‑445/‑160)	ydfJ/ynfT	putative transporter YdfJ/Qin prophage; protein YnfT
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (66/53); total (66/53)

Only 100 of 119 total aligned reads displayed.

ATCACATTCATTCCTCCGCATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATAT  >  NC_000913/1632595‑1632865

aTCACATTCATTCCTCCGCATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGcc                                                                                                                                     >  2:859188/1‑140 (MQ=25)

 tCACATTCATTCCTCCGCATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCg                                                                                                                                    >  2:788635/1‑140 (MQ=25)

    cattcattCCTCCGCATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCtt                                                                                                                                 <  1:435479/140‑1 (MQ=255)

     attcattcCTCCGCATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTc                                                                                                                                >  1:855091/1‑140 (MQ=38)

         attcCTCCGCATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCt                                                                                                                            <  1:846779/140‑1 (MQ=255)

          ttcCTCCGCATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCtt                                                                                                                           >  1:589863/1‑140 (MQ=38)

               ccGCATC‑AAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCa                                                                                                                     >  2:783067/1‑140 (MQ=255)

                cGCATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCa                                                                                                                     >  1:163677/1‑140 (MQ=38)

                  cATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTATATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATa                                                                                                                   >  1:754104/1‑140 (MQ=255)

                  cATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATa                                                                                                                   >  1:747852/1‑140 (MQ=38)

                   aTCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATaa                                                                                                                  >  2:294652/1‑140 (MQ=38)

                     cAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAAc                                                                                                                <  2:424369/140‑1 (MQ=255)

                       aaGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCtt                                                                                                                           >  2:464796/1‑127 (MQ=255)

                       aaGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCtt                                                                                                                           <  1:464796/127‑1 (MQ=38)

                        aGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCtt                                                                                                                           <  1:584344/126‑1 (MQ=255)

                        aGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCta                                                                                                                           >  2:584344/1‑125 (MQ=255)

                             tataGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGAt                                                                                                        >  2:323626/1‑140 (MQ=38)

                                    tataTCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTtgct                                                                                                 >  1:389568/1‑140 (MQ=255)

                                    tataTCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTtgct                                                                                                 >  1:277447/1‑140 (MQ=255)

                                      tatCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTtgctgc                                                                                               <  1:323626/140‑1 (MQ=255)

                                      tatCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTtgctgc                                                                                               <  1:859188/140‑1 (MQ=255)

                                      tatCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTtgctgc                                                                                               <  2:887558/140‑1 (MQ=255)

                                            cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTg                                                                                         >  2:268132/1‑140 (MQ=255)

                                            cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTg                                                                                         >  1:942111/1‑140 (MQ=255)

                                            cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTg                                                                                         >  1:807553/1‑140 (MQ=255)

                                            cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTg                                                                                         >  2:346219/1‑140 (MQ=255)

                                            cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTg                                                                                         >  1:73859/1‑140 (MQ=255)

                                            cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTg                                                                                         >  2:207102/1‑140 (MQ=255)

                                                atatTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAg                                                                                     >  2:67431/1‑140 (MQ=255)

                                                atatTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAg                                                                                     <  1:241607/140‑1 (MQ=255)

                                                  atTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCa                                                                                   <  1:667413/140‑1 (MQ=255)

                                                  atTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCa                                                                                   <  2:613176/140‑1 (MQ=255)

                                                   tttttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCAt                                                                                  <  1:838891/140‑1 (MQ=255)

                                                   tttttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCAt                                                                                  <  2:277447/140‑1 (MQ=255)

                                                     tttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTc                                                                                <  2:672038/140‑1 (MQ=255)

                                                      ttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTcc                                                                               >  1:629717/1‑140 (MQ=255)

                                                      ttctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTcc                                                                               >  1:666818/1‑140 (MQ=255)

                                                           tttcAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGtat                                                                          >  2:425266/1‑140 (MQ=255)

                                                           tttcAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGtat                                                                          <  2:73859/140‑1 (MQ=255)

                                                                      aaCTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGa                                                               <  2:508286/140‑1 (MQ=38)

                                                                        cTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACa                                                             <  1:67431/140‑1 (MQ=38)

                                                                          gTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAAt                                                           >  2:21118/1‑140 (MQ=255)

                                                                           ttATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATg                                                          >  1:226092/1‑140 (MQ=255)

                                                                                     ataCTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACg                                                <  2:648084/140‑1 (MQ=38)

                                                                                      taCTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGa                                               <  2:226092/140‑1 (MQ=38)

                                                                                       aCTTTTAGACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGaa                                              >  2:356565/1‑140 (MQ=255)

                                                                                       aCTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTa                                                  <  1:417696/136‑1 (MQ=38)

                                                                                       aCTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGaa                                              >  2:10439/1‑140 (MQ=255)

                                                                                        cTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAAc                                             >  1:338986/1‑140 (MQ=255)

                                                                                         ttttAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGa                                               >  2:693429/1‑137 (MQ=255)

                                                                                         ttttAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACt                                            >  2:671635/1‑140 (MQ=255)

                                                                                            tAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACt                                            >  2:900657/1‑137 (MQ=255)

                                                                                            tAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTa                                         >  1:358340/1‑140 (MQ=255)

                                                                                            tAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTa                                         >  2:863707/1‑140 (MQ=255)

                                                                                              aaCCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAg                                       >  2:419691/1‑140 (MQ=255)

                                                                                                   aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAacac                                  >  2:154757/1‑140 (MQ=255)

                                                                                                   aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAacac                                  >  2:502107/1‑140 (MQ=255)

                                                                                                   aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAacac                                  >  2:671248/1‑140 (MQ=255)

                                                                                                   aaTCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAacac                                  >  2:397560/1‑140 (MQ=255)

                                                                                                     tCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAccc                                <  1:671248/140‑1 (MQ=37)

                                                                                                     tCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAccc                                >  1:561218/1‑140 (MQ=255)

                                                                                                     tCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAccc                                >  1:496604/1‑140 (MQ=37)

                                                                                                     tCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAccc                                <  1:346219/140‑1 (MQ=37)

                                                                                                            agagTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATaa                         <  1:714176/140‑1 (MQ=255)

                                                                                                              agTCTCTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATaaaa                       >  1:22757/1‑140 (MQ=255)

                                                                                                                tctcTACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAAt                     >  1:433568/1‑140 (MQ=255)

                                                                                                                 ctctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAAtt                    >  2:129185/1‑140 (MQ=255)

                                                                                                                 ctctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAAtt                    >  1:376383/1‑140 (MQ=255)

                                                                                                                 ctctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAAtt                    <  1:502107/140‑1 (MQ=255)

                                                                                                                 ctctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAAtt                    <  1:760930/140‑1 (MQ=255)

                                                                                                                   ctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc                                 <  2:390344/125‑1 (MQ=38)

                                                                                                                   ctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc                                 >  1:256800/1‑125 (MQ=255)

                                                                                                                   ctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc                                 <  2:256800/125‑1 (MQ=38)

                                                                                                                   ctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACAcc                                 >  1:390344/1‑125 (MQ=255)

                                                                                                                   ctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGt                  >  1:189526/1‑140 (MQ=255)

                                                                                                                   ctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGt                  <  1:294652/140‑1 (MQ=255)

                                                                                                                   ctACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGt                  <  2:589863/140‑1 (MQ=255)

                                                                                                                    tACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTc                 <  1:154757/140‑1 (MQ=255)

                                                                                                                    tACATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTc                 >  2:216560/1‑140 (MQ=255)

                                                                                                                      cATAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTGAGAACACCCAAGATAAAAATTGTCaa               <  1:159084/140‑1 (MQ=255)

                                                                                                                        tAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACt             <  2:561218/140‑1 (MQ=37)

                                                                                                                        tAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACt             <  1:231753/140‑1 (MQ=37)

                                                                                                                        tAAGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACt             <  2:666818/140‑1 (MQ=38)

                                                                                                                          aGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtat           >  2:143575/1‑140 (MQ=37)

                                                                                                                          aGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtat           >  2:745857/1‑140 (MQ=255)

                                                                                                                          aGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtat           >  2:732272/1‑140 (MQ=255)

                                                                                                                          aGATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtat           >  2:420870/1‑140 (MQ=255)

                                                                                                                           gATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtata          <  2:433568/140‑1 (MQ=38)

                                                                                                                           gATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtata          <  1:10439/140‑1 (MQ=38)

                                                                                                                           gATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtata          <  1:429338/140‑1 (MQ=38)

                                                                                                                           gATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtata          <  2:189526/140‑1 (MQ=38)

                                                                                                                           gATAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtata          >  1:706415/1‑140 (MQ=255)

                                                                                                                            aTAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCaa               >  1:486794/1‑134 (MQ=255)

                                                                                                                            aTAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCaa               <  2:486794/134‑1 (MQ=38)

                                                                                                                            aTAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACt             >  1:283175/1‑136 (MQ=255)

                                                                                                                            aTAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACt             <  2:283175/136‑1 (MQ=38)

                                                                                                                             tAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATc        <  2:358340/140‑1 (MQ=38)

                                                                                                                             tAGTTTGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATc        <  2:855091/140‑1 (MQ=38)

                                                                                                                                 ttGCAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCatat    >  1:129259/1‑140 (MQ=255)

                                                                                                                                    cAGCTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtata          <  2:601539/131‑1 (MQ=37)

ATCACATTCATTCCTCCGCATCAAAGGCATATAGGCTATATCACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATAT  >  NC_000913/1632595‑1632865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`