| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,604,013 | C→A | Q77H (CAG→CAT) | ftsY ← | signal recognition particle receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,604,013 | 0 | C | A | 96.2% | 84.8 / ‑2.5 | 26 | Q77H (CAG→CAT) | ftsY | signal recognition particle receptor |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (10/15); total (10/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.29e-01 | |||||||||||
ACCGCTTCGGCGTTGACGTCTTCCGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACCTGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGCTCTTGCGCCTGAACGATTTCTTCTACAAC > NC_000913/3603876‑3604144 | aCCGCTTCGGCGTTGACGTCTTCCGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATg > 1:319933/1‑140 (MQ=255)aCCGCTTCGGCGTTGACGTCTTCCGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATg > 2:903595/1‑140 (MQ=255) cTTCGGCGTTGACGTTTTCCGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACCTGTTCa < 2:525280/140‑1 (MQ=255) tCGGCGTTGACGTCTTCCGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGt < 2:559252/140‑1 (MQ=255) cGGCGTTGACGTCTTCCGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTg < 2:924087/140‑1 (MQ=255) gCGTTGACGTCTTCCGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGAc < 1:903595/140‑1 (MQ=255) ccGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGt < 1:610827/124‑1 (MQ=255) ccGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGt > 2:610827/1‑124 (MQ=255) gTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCg < 2:319933/140‑1 (MQ=255) gATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCtt < 2:282043/140‑1 (MQ=255) aTAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTc > 1:343796/1‑140 (MQ=255) aTAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTc > 1:918664/1‑140 (MQ=255) ggCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATgcgc > 1:100839/1‑140 (MQ=255) gCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCagag < 2:100839/140‑1 (MQ=255) gtgCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGcc < 2:918664/140‑1 (MQ=255) gACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAg < 2:295856/140‑1 (MQ=255) tCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGctc > 2:656094/1‑140 (MQ=255) cGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCaga < 2:175115/123‑1 (MQ=255) cGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCaga > 1:175115/1‑123 (MQ=255) ggCTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGCTCTTGCGCCTg < 2:952597/140‑1 (MQ=255) cTGCGCTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGCTCTTGCGCCTGaa < 2:343796/140‑1 (MQ=255) cTTTTTCACTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGCTCTTGCGCCTGAACGAtt < 2:389348/140‑1 (MQ=255) cTTTCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGCTCTTGCGCCTGAACGATTTCTTCTAc > 1:491421/1‑140 (MQ=255) tCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGCTCTTGCGCCTGAACGATTTCTTCTACa > 2:1051157/1‑138 (MQ=255) tCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGCTCTTGCGCCTGAACGATTTCTTCTACa < 1:1051157/138‑1 (MQ=255) tCAGCAACATGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGCTCTTGCGCCTGAACGATTTCTTCTACAAc < 2:491421/140‑1 (MQ=255) | ACCGCTTCGGCGTTGACGTCTTCCGGCAACGGCAGCTCTTCACGTTCGATAGCCACTGGCTCCGGCGTTTCTTCTACGACCGGTTCCGGCTGTGCAACGACTTCCGCTTCAGGCTGCGCTTTTTCACTTTCAGCAACCTGTTCAGTGACTTCCACAACGTCGGCAGCAAAAGTTTCCGCCTCGGCTTCAGTATGCGCTTGCGGCTGCTCTTCAACGGCTTGTTCAGAGGCCTTCACAGGCTCTTGCGCCTGAACGATTTCTTCTACAAC > NC_000913/3603876‑3604144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |