New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 14338763 (0.020)58 (0.390)
+GAA		 4/252 9.4 95.0% intergenic (‑202/+115) pinR/ynaE Rac prophage; putative site‑specific recombinase/Rac prophage; uncharacterized protein YnaE
?NC_000913 1433877 = 3 (0.020)intergenic (‑203/+114) pinR/ynaE Rac prophage; putative site‑specific recombinase/Rac prophage; uncharacterized protein YnaE
Rejected: Coverage evenness skew score above cutoff.

ACACGTTCGAAAATAAACGAATGCGTATGCAACCCCGTAATTTTGGTGAGACCCAAAATCGATTTTGTGAAAAATGGCTTTAACTCGGTTTGTTTTTCGAGTTCCGGGCGGACTCAAGGAAGAAGAATAGTGTTGCGTGTTATTTTAACCAGATTTCAAGTTGTTTGGTCGTGGAAAAGTGGAGCAAAATGTTGTTA  >  NC_000913/1433759‑1433955
                                                                                                                     |                                                                               
acccGTTCGAAAATAAACGAATGCGTATGCAACCCCGTAATTTTGGTGAGACCCAAAATCGATTTTGTGAAAAATGGCTTTAACTCGGTTTGTTTTTCGAGTTCCGGGCGGACTCAAGGACGAAGAATAGTGTTGCgtgt                                                           >  2:743582/4‑140 (MQ=1)
                                         ttcggTGAGACCCAAAATCGATTTTGTGAAAAATGGCTTTAACTCGGTTTGTTTTTCGAGTTCCGGGCGGACTCAAGGAAGAAGAATAGTGTTGCGTGTTATTTTAACCAGATTTCAAGTTGTTTGGTCGTGGAAAAGTg                  <  1:855492/137‑1 (MQ=1)
                                                         aaggagtttGAGAAAAATGGCTTTAACTCTGTTTGTTTTTCGAGTTCCGGGCGGAGTCAAGGAAGAAGGATAGTGTTACGGGTTATTTTAACCAGACATCAAGTTGTCTGGTCGTGGAAAAGTGGAGCAAAATTTTGTTa  <  2:834120/134‑1 (MQ=1)
                                                                                                                     |                                                                               
ACACGTTCGAAAATAAACGAATGCGTATGCAACCCCGTAATTTTGGTGAGACCCAAAATCGATTTTGTGAAAAATGGCTTTAACTCGGTTTGTTTTTCGAGTTCCGGGCGGACTCAAGGAAGAAGAATAGTGTTGCGTGTTATTTTAACCAGATTTCAAGTTGTTTGGTCGTGGAAAAGTGGAGCAAAATGTTGTTA  >  NC_000913/1433759‑1433955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.