Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,926,3660AC21.6% 394.6 / 24.5 153G30G (GGT→GGG) mioCflavoprotein MioC
Reads supporting (aligned to +/- strand):  ref base A (93/27);  new base C (0/33);  total (93/60)
Fisher's exact test for biased strand distribution p-value = 2.55e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 173 total aligned reads displayed.

TGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGT  >  NC_000913/3926229‑3926503
                                                                                                                                           |                                                                                                                                          
tGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑cc                                                                                                                                         >  1:1505698/1‑140 (MQ=255)
tGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑cc                                                                                                                                         >  1:1975410/1‑140 (MQ=255)
tGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑cc                                                                                                                                         >  1:1602306/1‑140 (MQ=255)
tGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑cc                                                                                                                                         >  1:2580832/1‑140 (MQ=255)
  ttCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCg                                                                                                                                       >  1:641861/1‑140 (MQ=255)
    ccTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGcc                                                                                                                                     >  1:1459528/1‑140 (MQ=255)
    ccTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGcc                                                                                                                                     >  1:2092127/1‑140 (MQ=255)
      tGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCctc                                                                                                                                   >  2:1319687/1‑140 (MQ=255)
       gCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCctct                                                                                                                                  <  2:15746/140‑1 (MQ=255)
          aTGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTcc                                                                                                                               <  1:2390193/140‑1 (MQ=255)
            gCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAg                                                                                                                             >  2:759061/1‑140 (MQ=255)
              ttCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCt                                                                                                                           >  2:1875877/1‑140 (MQ=255)
              ttCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCt                                                                                                                           >  1:1758125/1‑140 (MQ=255)
                cATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCttt                                                                                                                         >  2:961158/1‑140 (MQ=255)
                  tAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTc                                                                                                                       >  2:2345031/1‑140 (MQ=255)
                  tAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTc                                                                                                                       >  2:2695962/1‑140 (MQ=255)
                      aaggagaaggtTTGTCCGGAATATCCCCGGCACCGTGGGTGGACCGTATAACCAGCCAGT‑TCCCTGAGCCAGGTAAT‑TTTTCAAACACGGGACCGGGGAGGGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGcc                                                                                                                   <  2:315936/140‑1 (MQ=255)
                       aggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCa                                                                                                                  >  2:28359/1‑140 (MQ=255)
                       aggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCa                                                                                                                  >  2:2527362/1‑140 (MQ=255)
                          agaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGgt                                                                                                               >  2:2381787/1‑140 (MQ=255)
                           aaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGgtg                                                                                                              <  2:879957/139‑1 (MQ=255)
                             aaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGCCCGTGCGGCGTTTCGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            <  2:412313/140‑1 (MQ=255)
                             aaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            >  1:315936/1‑140 (MQ=255)
                             aaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            <  1:2848914/140‑1 (MQ=255)
                             aaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑CCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            <  1:1713175/140‑1 (MQ=255)
                             aaggTTGTCCGGAATATCCCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            <  1:1028882/140‑1 (MQ=255)
                               ggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCt                                                                                                          <  2:2926079/140‑1 (MQ=255)
                                 ttGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGc                                                                                                        >  2:2047435/1‑140 (MQ=255)
                                  tGTCCGGAATATCTCCGGCCCCGTGGGTGGAGCTGATACCCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGCCCGTGCAGCGTTTCGGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCt                                                                                                       <  2:1866893/140‑1 (MQ=255)
                                   gTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTa                                                                                                      >  2:1393912/1‑140 (MQ=255)
                                   gTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTa                                                                                                      >  1:568892/1‑140 (MQ=255)
                                   gTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTa                                                                                                      >  1:2859667/1‑140 (MQ=255)
                                    tCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            >  2:2647361/1‑133 (MQ=255)
                                      cGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACat                                                                                                   >  1:2435439/1‑140 (MQ=255)
                                              ctcCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCa                                                                                           >  2:445670/1‑140 (MQ=255)
                                              ctcCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCa                                                                                           >  1:1945873/1‑140 (MQ=255)
                                               tcCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            >  1:2253506/1‑122 (MQ=255)
                                               tcCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            <  2:2253506/122‑1 (MQ=255)
                                                   gCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCAccgcc                                                                                      >  1:25147/1‑140 (MQ=255)
                                                       cGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAgg                                                                                  >  1:1022100/1‑140 (MQ=255)
                                                       cGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAgg                                                                                  >  2:798141/1‑140 (MQ=255)
                                                        gtgggtggAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAggg                                                                                 >  1:42779/1‑140 (MQ=255)
                                                        gtgggtggAGCTGAAACCCAGCCAGA‑‑CCCTGGGGGCGGTAAATTTTTCAACCAGCGGCCCGGGCAGCTTTTGGGGGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAggg                                                                                 <  2:2269715/140‑1 (MQ=255)
                                                         tgggtggAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTTCTACATATTCGGCACCGCCGAGGGt                                                                                >  1:118929/1‑140 (MQ=255)
                                                          gggtggAGCTGATACCCAGCCAGT‑TCCCGGGGGCAGGTAAA‑TTTTCTAACAGCGGCCGGTGCAGCTTTTGGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGtg                                                                               <  2:25147/140‑1 (MQ=255)
                                                          gggtggAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGtg                                                                               >  1:306810/1‑140 (MQ=255)
                                                                gtggataaaCCATCCTGATTCCGTGGGGCGGTTAAT‑TTTTCTAACGGTGTCCCGTGCGGGTTTGCGGTGGAAATC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGcc                                                                          <  2:641861/133‑1 (MQ=255)
                                                                ggCTGATAACCAGCCAGA‑TCCCTGAGGCAGGAAAA‑TCTTCAAACAGCGGCCGGTGCGGCTTTTGGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCg                                                                         <  2:2064372/139‑1 (MQ=255)
                                                                  cTGATAACCAGCCAGA‑CCCCGGAGGCAGGAAAA‑TTTTCAAACAGCGGCCCGTCCGGTTTTTCGGGGGAAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCt                                                                       <  2:1459528/140‑1 (MQ=255)
                                                                     aTACCCAGCCAGA‑CCCCTGAGGCAGGAAAA‑TCTTCTAACAGCGGCCCGGGCAGCTTTTCGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    <  2:170620/140‑1 (MQ=255)
                                                                     aTAACCAGCAAGA‑CCCTGGAGGAAGGAAAT‑TCTTCAAACAGCGGCCCGTGCAGCGTTTGGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTTCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    <  2:118929/140‑1 (MQ=255)
                                                                      aaaCCAGCCAGA‑TCCCGGAGGCAGGAAAT‑TCTTCTAACAGCGGCCGGTGCAGCTTTTGGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATa                                                                   <  2:2580832/139‑1 (MQ=255)
                                                                       aaCCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCACTGATaa                                                                  >  1:952859/1‑140 (MQ=255)
                                                                          cggccatA‑TCCCGGGGGCAGTAAAA‑TCTCCAAACAGCGGCCCGTGCAGCGTTCCGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAagag                                                               <  2:11622/138‑1 (MQ=255)
                                                                            gccagA‑TCCCTGAGGCAGGAAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAagagct                                                             >  1:102245/1‑138 (MQ=255)
                                                                               agA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGata                                                          >  1:1312740/1‑140 (MQ=255)
                                                                               agA‑TCCCTGAGGCAGGCAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGata                                                          >  2:383005/1‑140 (MQ=255)
                                                                                gA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGatat                                                         <  1:2381787/140‑1 (MQ=255)
                                                                                gA‑TCCCGGAGGAAGGAAAA‑TCTTCAAAGGGCGGCCCGTGCAGCTTTTCGGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTGTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGatat                                                         <  2:1953258/140‑1 (MQ=255)
                                                                                        gAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCAt                                                  >  2:1761046/1‑140 (MQ=255)
                                                                                            cagatAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAAc                                              >  1:112407/5‑140 (MQ=255)
                                                                                              ggTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  1:237402/1‑140 (MQ=255)
                                                                                              ggTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  1:1878476/1‑140 (MQ=255)
                                                                                               ttAAT‑TCTTCTAACGGGGGCCCGTGCGGGTTTTCGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  2:1139986/139‑1 (MQ=255)
                                                                                               gTAAA‑TTTTTTAACACGGGCCGGTCCTGCTTTTCGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:523525/140‑1 (MQ=255)
                                                                                               gTAAA‑TCTTCTAACGGCGGCCCGTGCAGCTTTTCGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:961158/140‑1 (MQ=255)
                                                                                               gTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           >  1:47535/1‑140 (MQ=255)
                                                                                               gTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:798141/140‑1 (MQ=255)
                                                                                               gTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           >  1:247243/1‑140 (MQ=255)
                                                                                               gTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGGGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:1982205/140‑1 (MQ=255)
                                                                                                gaaattcttctAACGGCGGCCGGTGCAGCTTTTGGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  2:2776494/135‑1 (MQ=255)
                                                                                                 aaa‑TCTTCTAACGGCGGACGGTGCGGCTTTTGGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCa                                         <  2:1112736/140‑1 (MQ=255)
                                                                                                 aaa‑TCTTCTAACAGCGGCCCCGGCAGTGTTTCGGTGAAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATCCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCa                                         <  2:822909/140‑1 (MQ=255)
                                                                                                 aaa‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCa                                         <  1:1393912/140‑1 (MQ=255)
                                                                                                 aaa‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCa                                         <  1:2778088/140‑1 (MQ=255)
                                                                                                   a‑TCTTCTAACAGCGGCCCGTGCAGCTTTTGGGTGGAAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCAGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCAcc                                       <  1:2695962/140‑1 (MQ=255)
                                                                                                   a‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCAcc                                       >  1:1864103/1‑140 (MQ=255)
                                                                                                    tttttctAACGGGGGCCGGGGCGGCGTTTCGGTGTAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCAcc                                       <  1:2634196/137‑1 (MQ=255)
                                                                                                    tttttctAACAGGGGCCCGGGC‑GTGTTTTGGTGGTAAAACCCCGCCTCTTCCATCTTTTCAGCCAGGTGTTCTGCTACATATTCGCCCCCCCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCAcc                                       <  2:1818572/137‑1 (MQ=255)
                                                                                                    ttcttcaAACAGCGGCCCGTGCAGTTTTTCGGTGAAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCAcc                                       <  2:2435439/139‑1 (MQ=255)
                                                                                                     tcttctACCGGCGGCCCGTGCGGTTTTTGGGTGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCt                                      <  2:2870090/140‑1 (MQ=255)
                                                                                                          tAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTttatt                                 >  1:2329297/1‑140 (MQ=255)
                                                                                                          tAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTttatt                                 >  2:674/1‑140 (MQ=255)
                                                                                                              ggCGGCCGGTGCGGCTTTTCGGGGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAaga                             <  2:331687/139‑1 (MQ=255)
                                                                                                              aGCGGACGGTGCAGCGTTTCGGTGGTAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAaga                             <  1:275764/140‑1 (MQ=255)
                                                                                                              aGCGGACCGTGCAGCTTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAaga                             <  1:1845630/140‑1 (MQ=255)
                                                                                                               ggggcccGGGCGGCTTTTGGGGGGAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAagag                            <  2:825581/135‑1 (MQ=255)
                                                                                                                 ggcctgTGCGGGGTTTGGGTGAAAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTg                          <  2:2628334/135‑1 (MQ=255)
                                                                                                                 ggACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTg                          >  2:150389/1‑140 (MQ=255)
                                                                                                                       tGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTAt                    >  1:770576/1‑140 (MQ=255)
                                                                                                                       tGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTAt                    >  2:1037116/1‑140 (MQ=255)
                                                                                                                            cGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTAc               <  1:383005/140‑1 (MQ=255)
                                                                                                                                   gtggaAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGa        <  1:853009/140‑1 (MQ=255)
                                                                                                                                    tggtAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGaa       <  1:2527362/140‑1 (MQ=255)
                                                                                                                                     ggtAAAC‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAc      <  1:1134098/140‑1 (MQ=255)
                                                                                                                                      gtAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAc      >  1:2060502/1‑139 (MQ=255)
                                                                                                                                      gaaaac‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAcg     <  1:1775906/138‑1 (MQ=255)
                                                                                                                                        aaac‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAcgcg   <  2:2370395/140‑1 (MQ=255)
                                                                                                                                        aaaa‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAcgcg   <  1:323828/140‑1 (MQ=255)
                                                                                                                                         aaa‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGt  >  1:2704551/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                          
TGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA‑TCCCTGAGGCAGGTAAA‑TCTTCTAACAGCGGACCGTGCAGCGTTTCGGTGGTAAAA‑CCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGT  >  NC_000913/3926229‑3926503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑