Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,277,388 C→A intergenic (‑5/‑81) soxS ← / → soxR DNA‑binding transcriptional dual regulator SoxS/DNA‑binding transcriptional dual regulator SoxR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,277,3880CA100.0% 283.9 / NA 80intergenic (‑5/‑81)soxS/soxRDNA‑binding transcriptional dual regulator SoxS/DNA‑binding transcriptional dual regulator SoxR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (44/36);  total (44/36)

TGCGGAACATTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGG  >  NC_000913/4277254‑4277520
                                                                                                                                      |                                                                                                                                    
tGCGGAACATTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCct                                                                                                                                 >  1:92427/1‑140 (MQ=255)
tGCGGAACATTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCct                                                                                                                                 <  1:1280095/140‑1 (MQ=255)
tGCGGAACATTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCct                                                                                                                                 <  1:253064/140‑1 (MQ=255)
  cGGAACATTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCctct                                                                                                                               >  1:430970/1‑140 (MQ=255)
  cGGAACATTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCctct                                                                                                                               <  2:842779/140‑1 (MQ=255)
       cATTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCa                                                                                                                          <  2:160733/140‑1 (MQ=255)
          tCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAgtg                                                                                                                       >  1:954306/1‑140 (MQ=255)
          tCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAgtg                                                                                                                       >  2:934227/1‑140 (MQ=255)
          tCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAgtg                                                                                                                       >  2:35671/1‑140 (MQ=255)
                    tACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGt                                                                                                             <  1:1345414/140‑1 (MQ=255)
                          tttGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTc                                                                                                       >  1:1288501/1‑140 (MQ=255)
                            tGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCAt                                                                                                     <  2:92427/140‑1 (MQ=255)
                              aaTAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCt                                                                                                   >  1:253842/1‑140 (MQ=255)
                               aTAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTg                                                                                                  <  1:634709/140‑1 (MQ=255)
                                 aGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGtt                                                                                                <  1:35671/140‑1 (MQ=255)
                                  gCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTg                                                                                               <  2:1099691/140‑1 (MQ=255)
                                   ccTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCAt                                                                                                     >  1:182392/1‑133 (MQ=255)
                                   ccTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCAt                                                                                                     <  2:182392/133‑1 (MQ=255)
                                   ccTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgg                                                                                              >  1:1100433/1‑140 (MQ=255)
                                   ccTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgg                                                                                              >  1:446298/1‑140 (MQ=255)
                                   ccTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgg                                                                                              >  1:1148399/1‑140 (MQ=255)
                                   ccTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgg                                                                                              >  1:413009/1‑140 (MQ=255)
                                   ccTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgg                                                                                              >  1:1335014/1‑140 (MQ=255)
                                   ccTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGCCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgg                                                                                              >  2:21882/1‑140 (MQ=255)
                                    cTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTggg                                                                                             <  2:622678/140‑1 (MQ=255)
                                     tGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgggg                                                                                            <  2:513412/140‑1 (MQ=255)
                                     tGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTgggg                                                                                            <  2:808188/140‑1 (MQ=255)
                                        tttttttGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGt                                                                                         >  1:1419818/1‑140 (MQ=255)
                                           ttttGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTc                                                                                                       <  1:761737/123‑1 (MQ=255)
                                           ttttGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTc                                                                                                       >  2:761737/1‑123 (MQ=255)
                                                 gACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCt                                                                                <  1:1117365/140‑1 (MQ=255)
                                                  aCTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTc                                                                               <  2:430970/140‑1 (MQ=255)
                                                  aCTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTc                                                                               <  2:792220/140‑1 (MQ=255)
                                                  aCTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTc                                                                               <  2:213033/140‑1 (MQ=255)
                                                   cTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTggg                                                                                             >  1:700751/1‑125 (MQ=255)
                                                   cTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTggg                                                                                             <  2:700751/125‑1 (MQ=255)
                                                     aCATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAg                                                                            <  2:1223441/140‑1 (MQ=255)
                                                      cATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGt                                                                           <  2:1100433/140‑1 (MQ=255)
                                                            tGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACtt                                                                     <  2:1134756/140‑1 (MQ=255)
                                                               tAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAg                                                                  <  2:1335014/140‑1 (MQ=255)
                                                                aaGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAgg                                                                 >  1:129936/1‑140 (MQ=255)
                                                                 aGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGt                                                                >  1:725296/1‑140 (MQ=255)
                                                                    ggCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTaaa                                                             >  2:842595/1‑140 (MQ=255)
                                                                     gCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAg                                                            <  1:934227/140‑1 (MQ=255)
                                                                      cTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACt                                                                      <  1:130312/129‑1 (MQ=255)
                                                                      cTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACt                                                                      >  2:130312/1‑129 (MQ=255)
                                                                      cTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGc                                                           >  2:105267/1‑140 (MQ=255)
                                                                      cTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGc                                                           >  1:658479/1‑140 (MQ=255)
                                                                      cTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGc                                                           >  1:412270/1‑140 (MQ=255)
                                                                      cTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGc                                                           >  1:1441911/1‑140 (MQ=255)
                                                                        ggTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGa                                                         >  2:101580/1‑140 (MQ=255)
                                                                        ggTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGa                                                         >  2:37843/1‑140 (MQ=255)
                                                                                tGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGa                                                 <  2:1288501/140‑1 (MQ=255)
                                                                                   tCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGaaaa                                              >  2:1382862/1‑140 (MQ=255)
                                                                                   tCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGaaaa                                              >  2:1309620/1‑140 (MQ=255)
                                                                                   tCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGaaaa                                              >  2:381589/1‑140 (MQ=255)
                                                                                   tCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGaaaa                                              >  2:818860/1‑140 (MQ=255)
                                                                                   tCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGaaaa                                              >  2:930995/1‑140 (MQ=255)
                                                                                          tCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTa                                       >  2:178881/1‑140 (MQ=255)
                                                                                          tCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTa                                       >  2:1078219/1‑140 (MQ=255)
                                                                                            cATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTAcc                                     <  2:954306/140‑1 (MQ=255)
                                                                                               gCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCg                                  >  1:477480/1‑140 (MQ=255)
                                                                                               gCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTACGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCg                                  >  1:257265/1‑140 (MQ=255)
                                                                                                      gATCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTaaa                           <  2:129936/140‑1 (MQ=255)
                                                                                                       aTCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAg                          <  2:170161/140‑1 (MQ=255)
                                                                                                       aTCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAg                          <  1:37843/140‑1 (MQ=255)
                                                                                                       aTCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAg                          <  1:250661/140‑1 (MQ=255)
                                                                                                        tCCTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAgc                         >  1:218544/1‑140 (MQ=255)
                                                                                                         ccTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAg                          >  1:1131612/1‑138 (MQ=255)
                                                                                                         ccTGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAg                          <  2:1131612/138‑1 (MQ=255)
                                                                                                           tGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCgct                      >  2:1217771/1‑140 (MQ=255)
                                                                                                           tGAATAATTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCgct                      >  2:54044/1‑140 (MQ=255)
                                                                                                             aataatTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCgctgc                    >  1:1120936/1‑140 (MQ=255)
                                                                                                             aataatTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCgctgc                    >  2:691235/1‑140 (MQ=255)
                                                                                                             aataatTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCgctgc                    >  1:443229/1‑140 (MQ=255)
                                                                                                               taatTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTa                  <  2:1148399/140‑1 (MQ=255)
                                                                                                                 atTTTCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAAc                <  1:818860/140‑1 (MQ=255)
                                                                                                                  ttttCTGATGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAAcc               >  1:1108629/1‑140 (MQ=255)
                                                                                                                         aTGGGACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCg        <  2:725296/140‑1 (MQ=255)
                                                                                                                            ggACATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAg     <  2:658479/140‑1 (MQ=255)
                                                                                                                               cATAAATATGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTgg  <  2:477480/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                    
TGCGGAACATTCGTTGCAAGTACCACTTTGAATAGCCTGATTTTTTTGCGACTACATCAATGTTAAGCGGCTGGTCAATATGCTCGTCAATCCATGCGATAAGATCCTGAATAATTTTCTGATGGGACATAAATCTGCCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGG  >  NC_000913/4277254‑4277520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑