BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,580,996	C→A	noncoding (21/90 nt)	ryhB ←	small regulatory RNA RyhB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,580,996	0	C	A	100.0%	708.7 / NA	199	noncoding (21/90 nt)	ryhB	small regulatory RNA RyhB
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (107/92); total (107/92)

Only 100 of 204 total aligned reads displayed.

TCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCAAAGAGGACA  >  NC_000913/3580860‑3581132

 ccTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGa                                                                                                                                      <  1:2041417/140‑1 (MQ=255)

 ccTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGa                                                                                                                                      <  1:1332409/140‑1 (MQ=255)

     cTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGt                                                                                                                                  >  2:1778793/1‑140 (MQ=255)

        gAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCtt                                                                                                                               >  2:146827/1‑140 (MQ=255)

           tGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCt                                                                                                                            >  2:1430117/1‑140 (MQ=255)

           tGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCt                                                                                                                            >  2:470729/1‑140 (MQ=255)

            gcgcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTg                                                                                                                           >  2:447367/1‑140 (MQ=255)

             cgcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGa                                                                                                                          >  1:1273117/1‑140 (MQ=255)

             cgcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGa                                                                                                                          >  1:632333/1‑140 (MQ=255)

             cgcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGa                                                                                                                          >  1:1581240/1‑140 (MQ=255)

              gcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGAt                                                                                                                         <  1:1619913/140‑1 (MQ=255)

               cATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATc                                                                                                                        <  2:815296/140‑1 (MQ=255)

                aTAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATcg                                                                                                                       <  2:535848/140‑1 (MQ=255)

                aTAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATcg                                                                                                                       <  2:1715753/140‑1 (MQ=255)

                aTAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATcg                                                                                                                       >  1:1487374/1‑140 (MQ=255)

                 tAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATcgc                                                                                                                      <  1:2197381/140‑1 (MQ=255)

                  aaCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATcgcg                                                                                                                     <  1:232593/140‑1 (MQ=255)

                   aCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCga                                                                                                                    >  2:699436/1‑140 (MQ=255)

                   aCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCga                                                                                                                    <  2:758594/140‑1 (MQ=255)

                   aCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCga                                                                                                                    <  1:1101893/140‑1 (MQ=255)

                      aaCACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGAc                                                                                                                 <  2:2185694/140‑1 (MQ=255)

                      aaCACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGAc                                                                                                                 <  2:1612856/140‑1 (MQ=255)

                        cacaAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACaa                                                                                                               >  1:1526613/1‑140 (MQ=255)

                            aGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGA‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACaataat                                                                                                           >  1:476897/1‑140 (MQ=255)

                            aGCAATCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTAGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTAAGCGAGGGTCTTCCTGATCGCGAGACaataat                                                                                                           >  2:1647758/1‑140 (MQ=255)

                              cACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATcg                                                                                                                       <  1:1042002/126‑1 (MQ=255)

                               aCTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACaataataat                                                                                                        >  1:1919958/1‑140 (MQ=255)

                                 tCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtca                                                                                                      >  2:1480980/1‑140 (MQ=255)

                                   ccGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcatt                                                                                                    >  2:608336/1‑140 (MQ=255)

                                   ccGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcatt                                                                                                    >  1:1009329/1‑140 (MQ=255)

                                   ccGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcatt                                                                                                    <  1:145327/140‑1 (MQ=255)

                                   ccGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcatt                                                                                                    >  1:77491/1‑140 (MQ=255)

                                     gTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCTAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcattct                                                                                                  >  1:1655079/1‑140 (MQ=255)

                                     gTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcattct                                                                                                  >  2:1524748/1‑140 (MQ=255)

                                        gATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcattctcat                                                                                               <  2:2144287/140‑1 (MQ=255)

                                         aTAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcattctcatt                                                                                              <  2:1357816/140‑1 (MQ=255)

                                         aTAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcattctcatt                                                                                              <  1:699436/140‑1 (MQ=255)

                                           aaaTTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAAtcattctcattc                                                                                             >  2:882532/1‑140 (MQ=255)

                                             aTTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCa                                                                                          >  1:811398/1‑140 (MQ=255)

                                             aTTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCa                                                                                          >  1:633277/1‑140 (MQ=255)

                                              ttGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCAc                                                                                         <  2:23797/140‑1 (MQ=255)

                                                gagaACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACtt                                                                                       <  1:1552442/140‑1 (MQ=255)

                                                       aaaGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAac                                                                                >  1:366848/1‑140 (MQ=255)

                                                            tCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACttt                                                                           <  2:1273117/140‑1 (MQ=255)

                                                             cAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACtttt                                                                          <  2:438869/140‑1 (MQ=255)

                                                                aaaaaaaGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGc                                                                       >  1:269564/1‑140 (MQ=255)

                                                                       gCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCTATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCaaaaaaa                                                                <  1:1970394/140‑1 (MQ=255)

                                                                                 ggctggctAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGAc                                                      <  1:146827/140‑1 (MQ=255)

                                                                                 ggctggctAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGAc                                                      <  2:1581240/140‑1 (MQ=255)

                                                                                  gctggctAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACt                                                     >  2:261472/1‑140 (MQ=255)

                                                                                      gctAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCa                                                 >  2:342619/1‑140 (MQ=255)

                                                                                      gctAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCa                                                 >  2:188315/1‑140 (MQ=255)

                                                                                      gctAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCa                                                 >  2:546552/1‑140 (MQ=255)

                                                                                      gctAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCa                                                 >  1:2110461/1‑140 (MQ=255)

                                                                                      gctAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCa                                                 >  1:2093273/1‑140 (MQ=255)

                                                                                       ctAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCAt                                                >  1:1524085/1‑140 (MQ=255)

                                                                                          aGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTg                                             <  2:632333/140‑1 (MQ=255)

                                                                                          aGT‑AATACTGGAAGCAATGTGAGCAATGTCATGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTg                                             <  2:132467/140‑1 (MQ=255)

                                                                                                 aCTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGaaa                                          <  2:964458/137‑1 (MQ=255)

                                                                                                 aCTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTc                                       >  2:67690/1‑140 (MQ=255)

                                                                                                   tGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCaa                                     <  2:204804/140‑1 (MQ=255)

                                                                                                   tGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCaa                                     <  2:366848/140‑1 (MQ=255)

                                                                                                   tGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCaa                                     <  2:364775/140‑1 (MQ=255)

                                                                                                     gAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGaaa                                          >  1:2157502/1‑133 (MQ=255)

                                                                                                     gAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAatg                                   >  1:1259590/1‑140 (MQ=255)

                                                                                                     gAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAatg                                   <  1:1785560/140‑1 (MQ=255)

                                                                                                     gAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAatg                                   >  1:560625/1‑140 (MQ=255)

                                                                                                          aaTGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGtt                              >  1:665589/1‑140 (MQ=255)

                                                                                                          aaTGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGtt                              <  2:1901660/140‑1 (MQ=255)

                                                                                                          aaTGTGAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGtt                              >  2:435035/1‑140 (MQ=255)

                                                                                                            tgtgAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGa                            >  2:2112806/1‑140 (MQ=255)

                                                                                                            tgtgAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGa                            <  1:856661/140‑1 (MQ=255)

                                                                                                             gtgAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAGCACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGaa                           >  2:1233392/1‑140 (MQ=255)

                                                                                                             gtgAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGaa                           >  1:1890653/1‑140 (MQ=255)

                                                                                                              tgAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGaaa                          <  2:2093273/140‑1 (MQ=255)

                                                                                                              tgAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGaaa                          <  2:560625/140‑1 (MQ=255)

                                                                                                              tgAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGaaa                          <  1:1430117/140‑1 (MQ=255)

                                                                                                               gAGCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAg                         <  1:59651/140‑1 (MQ=255)

                                                                                                                 gCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAggg                       <  1:923740/140‑1 (MQ=255)

                                                                                                                 gCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAggg                       <  2:2194544/140‑1 (MQ=255)

                                                                                                                 gCAATGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAggg                       <  2:1338817/140‑1 (MQ=255)

                                                                                                                     tGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAt                   >  2:785987/1‑140 (MQ=255)

                                                                                                                     tGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAt                   <  1:33279/140‑1 (MQ=255)

                                                                                                                     tGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAt                   <  2:2023998/140‑1 (MQ=255)

                                                                                                                     tGTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAt                   <  2:1184551/140‑1 (MQ=255)

                                                                                                                      gTCGTGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAtt                  <  2:1208700/140‑1 (MQ=255)

                                                                                                                          tGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTAcc              >  1:895447/1‑140 (MQ=255)

                                                                                                                          tGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTAcc              <  1:975958/140‑1 (MQ=255)

                                                                                                                          tGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTAcc              <  2:1066140/140‑1 (MQ=255)

                                                                                                                          tGCTTTCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTAcc              <  2:1117358/140‑1 (MQ=255)

                                                                                                                               tCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAggg                       <  1:1376841/126‑1 (MQ=255)

                                                                                                                               tCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCaaa         <  1:7055/140‑1 (MQ=255)

                                                                                                                               tCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCaaa         <  1:1137281/140‑1 (MQ=255)

                                                                                                                               tCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCaaa         <  1:2189231/140‑1 (MQ=255)

                                                                                                                               tCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCaaa         >  1:427144/1‑140 (MQ=255)

                                                                                                                               tCAGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCaaa         >  2:2186559/1‑140 (MQ=255)

                                                                                                                                 aGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCAAaga       <  2:424279/140‑1 (MQ=255)

                                                                                                                                 aGGTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCAAaga       <  2:1487374/140‑1 (MQ=255)

                                                                                                                                  ggTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCAAagag      <  2:1973608/140‑1 (MQ=255)

                                                                                                                                   gTTCTCAGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCAAAGAgg     <  2:102236/140‑1 (MQ=255)

TCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGT‑AATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTACCCCAAAGAGGACA  >  NC_000913/3580860‑3581132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`