New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4373285	NA (NA)	3 (0.130)	3/226	2.6	NA	noncoding (12/34 nt)	other	REP328b
	?	NC_000913	= 4374507	NA (NA)					noncoding (9/34 nt)	other	REP329a

GCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCG  >  NC_000913/4373152‑4373424                                                                                                                                      |                                                                                                                                            gCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                                                                                         >  2:353289/1‑138 (MQ=255) gCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                                                                                         <  1:353289/138‑1 (MQ=255) gCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                                                                                                       >  2:267254/1‑140 (MQ=255) gCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                                                                                                       >  2:205241/1‑140 (MQ=255)                     gagGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACg                                                                                                                   >  2:251928/1‑140 (MQ=255)                     gagGCTGGGTGACAAACGAATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGATAATTTGTAGGCCGGATAAGGAGTTTACGGtgcatccggcaagagcaacaaacgca                                                                                                                   >  2:245953‑M1/1‑114 (MQ=255)                        gCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTa                                                                                                                <  2:368888/140‑1 (MQ=255)                                           aTTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGa                                                                                             <  1:444103/140‑1 (MQ=255)                                               ccTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACTATCACGTTATCAGTCAtt                                                                                                       >  2:291193/1‑126 (MQ=255)                                               ccTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACTATCACGTTATCAGTCAtt                                                                                                       <  1:291193/126‑1 (MQ=255)                                                   aTGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCa                                                                                     >  1:393361/1‑140 (MQ=255)                                                                               ggCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataaccttt                                                         >  2:98492‑M1/1‑56 (MQ=255)                                                                               ggCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGattatt                                                         >  2:213605/1‑140 (MQ=255)                                                                               ggCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGattatt                                                         >  2:274874/1‑140 (MQ=255)                                                                               ggCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGattatt                                                         >  1:398765/1‑140 (MQ=255)                                                                               ggCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATCAGCAAAGATGAGattatt                                                         >  2:25573/1‑140 (MQ=255)                                                                                  aTTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaat                                                      <  1:98492‑M1/140‑88 (MQ=255)                                                                                    tGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGcc                                                    >  2:37562/1‑140 (MQ=255)                                                                                    tGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGcc                                                    >  2:287995/1‑140 (MQ=255)                                                                                    tGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGcc                                                    >  1:107842/1‑140 (MQ=255)                                                                                    tGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGcc                                                    >  2:53925/1‑140 (MQ=255)                                                                                     gCAAGTGATTGCATGCTTGAGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCGCGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAACTATGAGATTATTTCGCCt                                                   >  2:428504/1‑140 (MQ=38)                                                                                      cAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCtg                                                  <  2:107842/140‑1 (MQ=255)                                                                                         cTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTgtgg                                               <  1:267254/140‑1 (MQ=255)                                                                                                      tGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCtg                                  <  1:274874/140‑1 (MQ=255)                                                                                                             ttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGAtt                           <  2:393361/140‑1 (MQ=255)                                                                                                                tAGGCCGGATAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttacttttt                        >  2:226176‑M1/1‑23 (MQ=255)                                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAaca                      >  1:21322/1‑140 (MQ=255)                                                                                                                   gcgggataAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacttttaattattcatatgcattgctgttgttactttttata                     <  2:449789‑M1/137‑121 (MQ=255)                                                                                                                   gCCGGATAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttactttttata                     <  2:431076‑M1/140‑121 (MQ=255)                                                                                                                   gCCGGATAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttactttttata                     >  2:416759‑M1/1‑20 (MQ=255)                                                                                                                   gCCGGATAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttactttttata                     <  1:126832‑M1/140‑121 (MQ=255)                                                                                                                   gCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAacac                     <  1:251928/140‑1 (MQ=255)                                                                                                                       gATAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttactttttatatagc                 >  1:350004‑M1/1‑16 (MQ=255)                                                                                                                        aTAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttactttttat                      >  1:61151‑M1/1‑15 (MQ=255)                                                                                                                        aTAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttactttttat                      <  2:61151‑M1/134‑120 (MQ=255)                                                                                                                        aTAAGGCGTTTACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgctgcataacctttaattattcatatgcattgctgttgttactttttacatagct                >  1:180141‑M1/1‑15 (MQ=255)                                                                                                                           aGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGa             <  1:287995/140‑1 (MQ=255)                                                                                                                                 ttACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttactttttatatagctaacaccaat       >  1:389096‑M1/1‑6 (MQ=255)                                                                                                                                 ttACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttactttttatatagcta               >  2:387999‑M1/1‑6 (MQ=255)                                                                                                                                 ttACGCtgcatccggcaagagcaacaaacgcaagtacagcaacctgtcattaaactgggaagtttaatctttgcccgttgcataacctttaattattcatatgcattgctgttgttactttttatatagcta               <  1:387999‑M1/132‑127 (MQ=255)                                                                                                                                      ccgcATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGcgcgcg  >  1:449477/1‑140 (MQ=255)                                                                                                                                      |                                                                                                                                            GCCCGAACTGATGTGATCCAGAGGCTGGGTGACAAACGTATAATTGCCTGATGCGCTTCGCTTATCAGGCCTACATAAGGCATTGCAACTGATTGAATGCTTGAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAACGATCACGTTATCAGTCATTTCAGGCTGGATGGCTCCAGCCTCGCATTAGCAAAGATGAGATTATTTCGCCTGTGGTGCAGTTTTGCTGGTGGATTGAACACGTAAGTGATGCAGCGCGCG  >  NC_000913/4373152‑4373424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.