| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,818,781 | C→A | intergenic (+197/‑93) | dinD → / → yicG | DNA damage‑inducible protein D/conserved inner membrane protein YicG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,818,781 | 0 | C | A | 96.1% | 171.4 / 0.9 | 51 | intergenic (+197/‑93) | dinD/yicG | DNA damage‑inducible protein D/conserved inner membrane protein YicG |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (30/19); total (31/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.47e-01 | |||||||||||
GTGAACACAATGGCTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTACAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCC > NC_000913/3818648‑3818912 | gTGAACACAATGGCTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTa > 2:121275/1‑140 (MQ=255)gTGAACACAATGGCTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTa > 1:642221/1‑140 (MQ=255) gAACACAATGGCTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATc > 1:270721/1‑140 (MQ=255) aTGGCTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTtcc > 2:746182/1‑140 (MQ=255) tGGCTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTtccc < 1:90964/140‑1 (MQ=255) ggCTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTttccc > 1:195241/1‑140 (MQ=255) ggCTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTtcccc > 1:944734/1‑140 (MQ=255) cTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTtcccctc > 1:75229/1‑140 (MQ=255) tGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTaa < 2:669397/139‑1 (MQ=255) tGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTaa > 1:669397/1‑139 (MQ=255) gCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTaaaa > 1:225781/1‑140 (MQ=255) gCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTaaaa > 2:894325/1‑140 (MQ=255) cACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTaaaaa > 1:738171/1‑140 (MQ=255) ctttctttTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAAtc > 1:880987/1‑140 (MQ=255) ttctttTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAAtctc > 2:716426/1‑140 (MQ=255) ttctttTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAAtctc > 2:429626/1‑140 (MQ=255) ttctttTCCCCCTCAGTTTTAACCTATTTTGTCTTATCCATATTCTCATACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATACCTAAAAGTTATCAATTGCCCCTCCCCTTAAAAAAtctc < 2:195241/140‑1 (MQ=255) ccccTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGa > 1:89768/1‑140 (MQ=255) ccccTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGa > 1:156972/1‑140 (MQ=255) ccTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACa < 2:782674/140‑1 (MQ=255) cTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACaa > 1:180440/1‑140 (MQ=255) tttAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGca < 2:90921/140‑1 (MQ=255) cTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTACAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATc < 1:271020/140‑1 (MQ=255) ttttttCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCt > 2:552354/1‑140 (MQ=255) tttttCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTa < 1:746182/140‑1 (MQ=255) tttCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTAcc < 2:180440/140‑1 (MQ=255) tGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCcag > 2:438593/1‑140 (MQ=255) tGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCcag > 2:718837/1‑140 (MQ=255) tGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCcag > 1:274507/1‑140 (MQ=255) cAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGAttttt < 1:112793/140‑1 (MQ=255) gaagTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGgaga > 1:409741/1‑140 (MQ=255) gTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGaa < 2:113842/140‑1 (MQ=255) agaagaATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCa > 2:652412/1‑140 (MQ=255) agaagaATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCa < 1:471657/140‑1 (MQ=255) agaagaATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCa < 1:854575/140‑1 (MQ=255) aagaaTGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTACAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATg > 2:158320/1‑140 (MQ=255) aagaaTGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATg < 2:642221/140‑1 (MQ=255) aagaaTGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATg < 2:880987/140‑1 (MQ=255) aagaaTGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATg < 2:89768/140‑1 (MQ=255) tGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGtt > 1:162614/1‑140 (MQ=255) gCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTa > 2:33674/1‑140 (MQ=255) gCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTa < 1:904822/140‑1 (MQ=255) gCATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTa > 2:791576/1‑140 (MQ=255) cATCTCTGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTac < 1:894325/140‑1 (MQ=255) tctGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACAt < 1:552354/140‑1 (MQ=255) ctGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACAtt < 2:270721/140‑1 (MQ=255) tGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACAttt > 2:557461/1‑140 (MQ=255) tGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACAttt > 2:360134/1‑140 (MQ=255) cTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTg > 2:947262/1‑140 (MQ=255) aGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTAtt < 2:738171/140‑1 (MQ=255) aaTAGCGATTTCACATAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATttggt > 2:286743/1‑140 (MQ=255) caTAACTAAAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGcc < 2:365642/140‑1 (MQ=255) | GTGAACACAATGGCTAAATATTGCACCTTTCTTTTCCCCCTCAGTTTTAACCTATTTTTTCTTATGCATTTTCTCAGACAAGAAGTCAGAAGAATGCATCTCTGCTACAGAAAATAGCGATTTCACATAACTACAAGTTATCAATTTCCCCTCCCCTTAAAAAATCTCAATCGTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGTTGGCATTACTGCC > NC_000913/3818648‑3818912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |