BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,293,064	C→A	W614L (TGG→TTG)	ccmF ←	holocytochrome c synthetase membrane subunit CcmF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,293,064	0	C	A	100.0%	402.6 / NA	111	W614L (TGG→TTG)	ccmF	holocytochrome c synthetase membrane subunit CcmF
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (58/53); total (58/53)

Only 100 of 128 total aligned reads displayed.

ATAATCAACGGAATTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCCAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCGGCAG  >  NC_000913/2292930‑2293199

   aTCAACGGAATTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAg                                                                                                                                 <  2:1793911/140‑1 (MQ=255)

     cAACGGAATTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCg                                                                                                                               <  1:1049613/140‑1 (MQ=255)

       aCGGAATTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCg                                                                                                                               <  1:893325/138‑1 (MQ=255)

       aCGGAATTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCg                                                                                                                               >  2:893325/1‑138 (MQ=255)

       aCGGAATTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGaa                                                                                                                             >  1:614571/1‑140 (MQ=255)

          gAATTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACaa                                                                                                                          <  1:1494517/140‑1 (MQ=255)

           aaTTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACaaa                                                                                                                         <  1:2447686/140‑1 (MQ=255)

           aaTTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACaaa                                                                                                                         <  2:9675/140‑1 (MQ=255)

            aTTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAAt                                                                                                                        <  1:1825769/140‑1 (MQ=255)

               aaCAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCCCGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGt                                                                                                                     <  2:378348/140‑1 (MQ=255)

               aaCAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGt                                                                                                                     <  2:141080/140‑1 (MQ=255)

                aCAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGtt                                                                                                                    <  2:2415006/140‑1 (MQ=255)

                aCAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGtt                                                                                                                    <  1:2292347/140‑1 (MQ=255)

                aCAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGtt                                                                                                                    <  1:1591161/140‑1 (MQ=255)

                aCAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGtt                                                                                                                    >  1:817571/1‑140 (MQ=255)

                aCAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGtt                                                                                                                    <  1:1750/140‑1 (MQ=255)

                aCAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGtt                                                                                                                    <  1:1949262/140‑1 (MQ=255)

                     aCTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTgtag                                                                                                               >  1:670664/1‑140 (MQ=255)

                     aCTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTgtag                                                                                                               >  1:391025/1‑140 (MQ=255)

                     aCTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTgtag                                                                                                               >  2:1140814/1‑140 (MQ=255)

                     aCTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTgtag                                                                                                               >  1:133981/1‑140 (MQ=255)

                         tGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaaa                                                                                                           >  2:1511650/1‑140 (MQ=255)

                         tGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaaa                                                                                                           >  2:1552058/1‑140 (MQ=255)

                         tGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaaa                                                                                                           >  2:212987/1‑140 (MQ=255)

                         tGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaaa                                                                                                           >  1:1367268/1‑140 (MQ=255)

                         tGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaaa                                                                                                           >  1:240910/1‑140 (MQ=255)

                         tGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaaa                                                                                                           >  2:295534/1‑140 (MQ=255)

                         tGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaaa                                                                                                           >  1:632003/1‑140 (MQ=255)

                         tGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaaa                                                                                                           >  1:2527404/1‑140 (MQ=255)

                         tGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaaa                                                                                                           >  1:409637/1‑140 (MQ=255)

                          gcgcTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAg                                                                                                          >  1:105076/1‑140 (MQ=255)

                              ttCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaa                                                                                                            <  2:1959834/134‑1 (MQ=255)

                              ttCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTaa                                                                                                            >  1:1959834/1‑134 (MQ=255)

                                cATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTgtagta                                                                                                             <  2:1358964/131‑1 (MQ=255)

                                cATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTgtagta                                                                                                             >  1:1358964/1‑131 (MQ=255)

                                cATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCAc                                                                                                    >  2:952999/1‑140 (MQ=255)

                                     ggCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGccc                                                                                               <  1:477021/140‑1 (MQ=255)

                                     ggCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGccc                                                                                               >  1:107968/1‑140 (MQ=255)

                                        cTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCAcg                                                                                            <  2:174128/140‑1 (MQ=255)

                                          ccGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCAcgcg                                                                                          <  1:1552058/140‑1 (MQ=255)

                                          ccGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCAcg                                                                                            >  1:1798341/1‑138 (MQ=255)

                                          ccGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCAcg                                                                                            <  2:1798341/138‑1 (MQ=255)

                                          ccGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCACCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCAcgcg                                                                                          >  2:976291/1‑140 (MQ=255)

                                           cGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACgcgc                                                                                         <  1:1126022/140‑1 (MQ=255)

                                             gcgcAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCg                                                                                       <  2:1785960/140‑1 (MQ=255)

                                                cAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGttt                                                                                    <  2:606006/140‑1 (MQ=255)

                                                 aGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGtttt                                                                                   >  2:1828102/1‑140 (MQ=255)

                                                   ttttttGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTcc                                                                                 <  1:89843/140‑1 (MQ=255)

                                                    tttttGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCa                                                                                <  2:105076/140‑1 (MQ=255)

                                                     ttttGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAg                                                                               <  1:1687197/140‑1 (MQ=255)

                                                        tGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGctc                                                                            >  1:444369/1‑140 (MQ=255)

                                                                cACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGa                                                                    <  1:2482071/140‑1 (MQ=255)

                                                                    cgcTTACGATAGCGAGGATCAAACAGACCCAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGc                                                                <  2:107968/140‑1 (MQ=255)

                                                                    cgcTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGc                                                                <  2:1446623/140‑1 (MQ=255)

                                                                       ttACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCcgc                                                             >  2:2382009/1‑140 (MQ=255)

                                                                         aCGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGa                                                                    <  1:2050951/131‑1 (MQ=255)

                                                                         aCGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGa                                                                    >  2:2050951/1‑131 (MQ=255)

                                                                          cGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTa                                                          <  1:295534/140‑1 (MQ=255)

                                                                          cGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTa                                                          <  2:1819691/140‑1 (MQ=255)

                                                                             tAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGc                                                                <  2:529767/131‑1 (MQ=255)

                                                                                cGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTc                                                    >  2:857349/1‑140 (MQ=255)

                                                                                cGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTc                                                    <  2:632003/140‑1 (MQ=255)

                                                                                cGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTc                                                    >  2:879067/1‑140 (MQ=255)

                                                                                 gAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCa                                                   <  1:952999/140‑1 (MQ=255)

                                                                                   ggATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCAcg                                                 >  1:163090/1‑140 (MQ=255)

                                                                                     aTCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCAcgcg                                               >  2:1230682/1‑140 (MQ=255)

                                                                                            aGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATgcc                                        >  1:292474/1‑140 (MQ=255)

                                                                                             gACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATgccg                                       >  1:480501/1‑140 (MQ=255)

                                                                                             gACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATgccg                                       <  2:299816/140‑1 (MQ=255)

                                                                                               cacaGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATgccgcc                                     >  2:2207502/1‑140 (MQ=255)

                                                                                                  agcagTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTc                                  >  1:1215128/1‑140 (MQ=255)

                                                                                                  agcagTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTc                                  >  2:417218/1‑140 (MQ=255)

                                                                                                    cagTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCaa                                >  2:2462142/1‑140 (MQ=255)

                                                                                                    cagTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGATTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCaa                                >  1:1406920/1‑140 (MQ=255)

                                                                                                      gTCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAAtt                              >  2:652231/1‑140 (MQ=255)

                                                                                                       tCCGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTg                             >  2:1316424/1‑140 (MQ=255)

                                                                                                        ccGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGc                            >  1:2310887/1‑140 (MQ=255)

                                                                                                         cGCCCAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGcc                           >  2:2539648/1‑140 (MQ=255)

                                                                                                             cAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCtt                       <  2:865720/140‑1 (MQ=255)

                                                                                                             cAACGCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCtt                       <  1:1811978/140‑1 (MQ=255)

                                                                                                                 gCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGt                   <  2:240910/140‑1 (MQ=255)

                                                                                                                 gCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGt                   <  1:652231/140‑1 (MQ=255)

                                                                                                                 gCCATCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGt                   >  2:1884815/1‑140 (MQ=255)

                                                                                                                 gCCACCATCAGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCCCCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGt                   <  2:1395872/140‑1 (MQ=255)

                                                                                                                          aGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCGCGGCCCACGCGCCGTTTTCCCGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGa          <  2:159001/140‑1 (MQ=255)

                                                                                                                          aGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGa          <  2:444369/140‑1 (MQ=255)

                                                                                                                          aGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGa          >  2:478804/1‑140 (MQ=255)

                                                                                                                          aGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGa          <  2:480501/140‑1 (MQ=255)

                                                                                                                          aGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGa          >  2:419445/1‑140 (MQ=255)

                                                                                                                          aGCCCGCCCGCCAAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGa          <  1:857349/140‑1 (MQ=255)

                                                                                                                           gcccgcccgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGAc         >  1:2454028/1‑140 (MQ=255)

                                                                                                                            cccgcccgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGAcc        <  2:391025/140‑1 (MQ=255)

                                                                                                                               gcccgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCgg     <  2:2527404/140‑1 (MQ=255)

                                                                                                                               gcccgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCgg     <  2:241251/140‑1 (MQ=255)

                                                                                                                               gcccgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCgg     <  1:879067/140‑1 (MQ=255)

                                                                                                                               gcccgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCgg     >  1:1889084/1‑140 (MQ=255)

                                                                                                                               gcccgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCgg     >  2:1144113/1‑140 (MQ=255)

                                                                                                                                cccgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCGGc    >  2:81465/1‑140 (MQ=255)

                                                                                                                                  cgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCGGCAg  <  1:778648/140‑1 (MQ=255)

                                                                                                                                  cgccaAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCGGCAg  <  1:982583/140‑1 (MQ=255)

ATAATCAACGGAATTAACAATACTTTGCGCTTCATACGGCCTCCGGCGCAGTTTTTTGCGGACTCACGCGCTTACGATAGCGAGGATCAAACAGACACAGCAGTCCGCCCAACGCCATCATCAGCCCGCCCGCCCAAATCCAGCGAACAAATGGTTTGTAGTAAAGACGCACGGCCCACGCGCCGTTTTCCAGCTCTTCACCGAGGGCCGCGTACAGGTCACGCGTGATGCCGCCGTCAATTGCCGCTTCGGTCATCATCGACCCGGCAG  >  NC_000913/2292930‑2293199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`