Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG39.1% 261.4 / 34.5 153T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (23/69);  new base G (59/0);  total (84/69)
Fisher's exact test for biased strand distribution p-value = 2.72e-23
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568365‑4568641
                                                                                                                                           |                                                                                                                                            
agcagggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGt                                                                                                                                              <  2:2713788/136‑1 (MQ=255)
    gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                                                                                                                                          <  1:1470001/140‑1 (MQ=255)
              gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                <  1:183533/140‑1 (MQ=255)
                cATCGGCATTAAAATCACGTACCACATTAATGATCCTAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATa                                                                                                                              >  2:2460583/1‑140 (MQ=255)
                cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATa                                                                                                                              >  1:2474315/1‑140 (MQ=255)
                cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATa                                                                                                                              >  2:351257/1‑140 (MQ=255)
                cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAACGGCATa                                                                                                                              >  2:478111/1‑140 (MQ=255)
                      cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaac                                                                                                                        <  1:478111/140‑1 (MQ=255)
                      cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaac                                                                                                                        <  1:585768/140‑1 (MQ=255)
                           aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTc                                                                                                                   <  2:2565252/140‑1 (MQ=255)
                                aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATAACAAAAAACCCCTTGt                                                                                                              >  2:43168/1‑140 (MQ=255)
                                     ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGga                                                                                                        <  2:1817589/140‑1 (MQ=255)
                                      cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAACACCTTGT‑CCgggg                                                                                                       >  2:2514095/1‑138 (MQ=255)
                                        caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGgagga                                                                                                     >  1:414241/1‑138 (MQ=255)
                                         aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AAc                                                                                                   >  1:2292187/1‑140 (MQ=255)
                                         aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGGATAAAAAACAACTCCTTTT‑CCgggggaa                                                                                                    >  2:1012795/1‑135 (MQ=255)
                                             aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAATCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGAAAAAAAAAGTTGGCAGAAAAAACAACTTCGTTT‑CCCGAG‑AGACCC‑a                                                                                              >  1:640533/1‑140 (MQ=255)
                                                aTCCCAGGCTGGATCAGATCCGTCTACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAATCCTTTT‑CCGGGG‑AAAACC‑aaaa                                                                                           >  2:2710011/1‑138 (MQ=255)
                                                aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAAAGTGGCATAAAAAAAAACTCCCTTT‑CCGGAG‑AACCCC‑AACg                                                                                           >  2:407500/1‑140 (MQ=255)
                                                aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACg                                                                                           >  1:216779/1‑140 (MQ=255)
                                                aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGT‑CCGGAG‑AAACCC‑CACg                                                                                           >  2:2103306/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACggg                                                                                         >  1:1522477/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACggg                                                                                         >  1:762868/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACAGGCAAAAAAAAAAAATCCTTTT‑CCGGAG‑AAACCC‑CACagg                                                                                         >  2:426267/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAAAACTCCTTGT‑CCGGAG‑AACCCC‑AACgggg                                                                                        >  1:1566359/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAAAAAAAAACTCCTTTT‑CCCGAG‑AACCCC‑CACgggg                                                                                        >  2:175443/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAAAACGGGATAAAAAACAACACCTTCT‑TCGGAG‑GACCCC‑AACgggg                                                                                        >  2:191667/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGCAAAAAACAGGGGGTAACAAAAAAAACCTTGTACCGGA‑‑AACCCC‑AACgggg                                                                                        >  2:500444/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCCTAACAAAAAAACCCCTGT‑CCGGGG‑AAACCC‑CACgggg                                                                                        >  2:154573/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACgggg                                                                                        >  1:1790036/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCCTTT‑CCCGAG‑AACCCC‑AACgggg                                                                                        >  1:1209493/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTTT‑CCGGGG‑AAACCC‑AACgggg                                                                                        >  2:1868721/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAACGGCAAAAAAAAAAACACCTTTT‑CCGGAG‑GAACCC‑CACgggg                                                                                        >  2:1791994/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCCGAACAAACAAATCCCTGT‑CCGGAG‑AACCCC‑AACgggg                                                                                        >  2:1521060/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGCGGCGGCATGGCGGGCAAAAAAACACTGGATAAAAAACAAAACCTTGT‑TCGGGG‑AACCCC‑AACaggg                                                                                        >  1:2067984/1‑140 (MQ=255)
                                                    cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGa                                                                                       <  1:840812/140‑1 (MQ=255)
                                                    cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGa                                                                                       <  1:107849/140‑1 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAACAGGGCGAAAAAAACAACTCCTCGT‑CCGGGG‑AACCCC‑CACGGGGgaaa                                                                                    >  2:2801471/1‑140 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGaaaa                                                                                    >  1:2399640/1‑140 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGaaaa                                                                                    >  1:2015973/1‑140 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCGTAAAAAAAAAACCCTTTT‑CCCGAG‑AACCCCAAACGGGGaaa                                                                                     >  2:594870/1‑140 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  <  1:610077/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  <  1:1012795/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  <  1:798930/140‑1 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGaa                                                                                >  2:853112/1‑140 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCATAAAAAACAACTCCTTTT‑CCGGAG‑AACCCC‑CACGGGGGAAACGaa                                                                                >  1:533082/1‑140 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAAAAAAAAAATCCTTTT‑CCGGGGAAACCCC‑ACCGGGGaaaagaa                                                                                 >  2:2160394/1‑137 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGaaa                                                                               <  1:2742219/140‑1 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGaaa                                                                               <  1:366193/140‑1 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCCTTT‑CCGGAG‑AACCCC‑AACGGGGGAAAAGaaa                                                                               >  1:126274/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACTCCTTTT‑CCGGAG‑AACCCC‑CACCGGGGAAAAAAAAATCaa                                                                          >  2:356827/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAACACCTTGT‑CCGGGG‑AAACCC‑CACGGGGAAAAAGAAAATCaa                                                                          >  2:202592/1‑140 (MQ=255)
                                                                    cGTCTACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATAc                                                                       <  1:2710011/140‑1 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATAcc                                                                      <  1:2514595/140‑1 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAAAAAACAAACCCTTGT‑CCGGGG‑AACCCC‑AACGGGGGAAAAGAAAATCAATaac                                                                      >  2:1499532/1‑138 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAAACCCCTTT‑CCGGGG‑GAACCC‑AACGGGGGAAAAAAAAATCAATaac                                                                      >  2:1698413/1‑138 (MQ=255)
                                                                       cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGaa                                                                                >  1:1703407/1‑128 (MQ=255)
                                                                       cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGt                                                                    <  1:1808644/140‑1 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                              <  1:191667/140‑1 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAACCCCTTT‑CCGGGG‑AACCCC‑CACGGGGGAAAAGAAAATTAATACCGTCGGTaa                                                              >  2:365108/1‑140 (MQ=255)
                                                                                   agcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAAAAAAAAACACCTTGT‑CCGGAG‑AACCCC‑CACGGGGGAAAAGAAAATCAAAACCCTCGGGAATGACGa                                                        >  2:1341874/1‑140 (MQ=255)
                                                                                     caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      <  2:2225496/140‑1 (MQ=255)
                                                                                     caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACACCTTGT‑CCGGAG‑AAACCC‑CACGGGGGAAACAAAAATCAAAAACGTCGGGAATGACGaaa                                                      >  2:2872476/1‑140 (MQ=255)
                                                                                     caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATTGAATAAAAAACAACCCCCTGT‑CCGGCG‑AAACCC‑AACAGGGGAAAAGAGAATCAATACCGGCGGGAATGACGaga                                                      >  2:810910/1‑138 (MQ=255)
                                                                                       aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  2:2037781/140‑1 (MQ=255)
                                                                                       aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAAGCATAACAAACAACTCCTTTT‑CCGGAG‑AACCCC‑AACGGGGGAAAAGAAAATAAATAACGCCGGTAACGAAGAAAgg                                                    >  2:2542487/1‑140 (MQ=255)
                                                                                          tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  1:471875/140‑1 (MQ=255)
                                                                                          tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  1:1523976/140‑1 (MQ=255)
                                                                                            aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                               <  1:594870/140‑1 (MQ=255)
                                                                                            aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                               <  2:2675439/140‑1 (MQ=255)
                                                                                              aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                             <  1:1519393/140‑1 (MQ=255)
                                                                                               cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAAAACCCTTT‑CCCGAG‑AAACCC‑AACGGGGAAAAACAAAATCAATAACGGCCGTAAAGACGAAAGGCAGGGgag                                            >  2:2754707/1‑140 (MQ=255)
                                                                                                aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:863194/140‑1 (MQ=255)
                                                                                                    tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAACTCCTTGT‑CCGGGG‑AAACCC‑AACGGGGGAAAAGAAAATCAAAACCGTCGGGAAAGACGAAAAGCAGGGGAGAAggg                                       >  2:2842548/1‑140 (MQ=255)
                                                                                                    tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGT‑CCGGAG‑AAACCC‑CACGGGGGAAAAGAAAATCAATACCCTCGGTAATGACGAAAAGCAGGGGAGAAggg                                       >  2:606105/1‑140 (MQ=255)
                                                                                                    tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCCTTGT‑CCGGAG‑AACCCC‑CACGGGGGAAACGAAAATCAATAACGTCGGGAATGACGAAAAGCAGGGGAGAAagg                                       >  2:2434500/1‑140 (MQ=255)
                                                                                                    tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAACAACTCCTTGT‑CCGGAG‑AACCCC‑CACGGGGGAAAAGAAAATTAATACCCTCGGTAATGACGAAAAGCAGGGGGGAAggg                                       >  2:1360960/1‑140 (MQ=255)
                                                                                                       aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                   >  2:1906816/1‑140 (MQ=255)
                                                                                                        cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAAAAAATCCTTTT‑CCCGGG‑AAACCC‑AACGGGGAAAAAGAAAATTAATACCGTCGGGAATGACGAAAAGCAGGGGGGAAGGGCaaa                                   >  2:2079360/1‑139 (MQ=255)
                                                                                                        cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACg                                  >  2:1618717/1‑140 (MQ=255)
                                                                                                         gCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACg                                  <  1:1698413/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:2682818/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:2883808/140‑1 (MQ=255)
                                                                                                            aTCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGGAAAAGAAAATCAAAACCCTCGGGAATGAAGAAAAGCAGGGGAGAAAGGCAACgaga                               >  2:789494/1‑140 (MQ=255)
                                                                                                             tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:789494/140‑1 (MQ=255)
                                                                                                             tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:2260316/140‑1 (MQ=255)
                                                                                                             tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:2434500/140‑1 (MQ=255)
                                                                                                                  aaaaaCAGCGTGGCGGCATTGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑ATCCCC‑AACGGGGAAAACGAAATTCAATTCCGTCGGTAATGTCGAAAGGCAGGTGAGAAGGGGAACGAGATTGCaa                         <  2:1010506/140‑1 (MQ=255)
                                                                                                                  aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  1:810910/140‑1 (MQ=255)
                                                                                                                        aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:2650159/140‑1 (MQ=255)
                                                                                                                           gTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAAAAAAAAACTCCTTGT‑CCGGAG‑AAACCC‑CACGGGGGAAAAGAAAATCAAAAACCGCGGGAATGACGAAAAGCAGGGGAGAAGGGGAAAGAGACTGCAAAAGTACTGa                >  2:2424041/1‑140 (MQ=255)
                                                                                                                                 gcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa          <  1:685120/140‑1 (MQ=255)
                                                                                                                                    tGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGt       <  2:1487188/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGCAATTCAACACCGTCAGTAATGTCGAGAGGCAGGTGAGAAGGGGAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:640533/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:533082/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:126274/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:762868/140‑1 (MQ=255)
                                                                                                                                       cGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  1:357334/140‑1 (MQ=255)
                                                                                                                                        cggTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATc   <  1:1906816/139‑1 (MQ=255)
                                                                                                                                         ggTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  1:434143/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568365‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑