Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,316,047 C→A intergenic (‑12/+369) yciG ← / ← trpA protein YciG/tryptophan synthase subunit alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,316,0470CA100.0% 813.3 / NA 223intergenic (‑12/+369)yciG/trpAprotein YciG/tryptophan synthase subunit alpha
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (89/134);  total (89/134)

Only 100 of 240 total aligned reads displayed.

TTCAGATGCGCGTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCCGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGAACATTCTGGATATA  >  NC_000913/1315910‑1316183
                                                                                                                                          |                                                                                                                                        
ttCAGATGCGCGTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagt                                                                                                                                        >  2:1172257/1‑140 (MQ=255)
 tgaagtGCGCGTTGCGAATTATTTTAAAAT‑TAACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagtt                                                                                                                                       <  2:886724/135‑1 (MQ=255)
 tCAGATGCGCGTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagtt                                                                                                                                       <  1:595069/140‑1 (MQ=255)
 tCAGAGGGGCGTCGCGAAATATTTTTAAAC‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagtt                                                                                                                                       <  1:2455427/140‑1 (MQ=255)
  cAGATGGGCTTTGCGGTTATTTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagttg                                                                                                                                      <  1:474929/140‑1 (MQ=255)
   aGATGCGCGTTGGGGATCTTTTTAAAAA‑TTCCCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagttgc                                                                                                                                     <  2:1510984/140‑1 (MQ=255)
    gATGCGCGTTGCGGATCTTTTTTAAAA‑TTCCCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagttgcg                                                                                                                                    <  2:2236284/140‑1 (MQ=255)
    gATGCGCGTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagttgcg                                                                                                                                    <  1:38618/140‑1 (MQ=255)
     gtGCGCGTGGGGGATTTTTTTAAAAA‑TTCCCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagttgcgt                                                                                                                                   <  2:507050/139‑1 (MQ=255)
     aTGCGCGTTGCGGATCTTTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCagttgcgt                                                                                                                                   <  1:192570/140‑1 (MQ=255)
        cgtgTTGCGGTTCTTTTTAAAAA‑TTCCCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAgttgcgttgc                                                                                                                                <  2:1757656/137‑1 (MQ=255)
         gcgTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCa                                                                                                                               <  1:2874063/140‑1 (MQ=255)
          cgTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCAt                                                                                                                              >  2:2554071/1‑140 (MQ=255)
          cgTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCAt                                                                                                                              >  2:523892/1‑140 (MQ=255)
          cgTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCAt                                                                                                                              >  1:1757656/1‑140 (MQ=255)
          cgTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCAt                                                                                                                              >  1:340093/1‑140 (MQ=255)
          cgTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCAt                                                                                                                              >  2:1108990/1‑140 (MQ=255)
          cgTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCAt                                                                                                                              >  1:2748358/1‑140 (MQ=255)
          cgTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCAt                                                                                                                              >  2:1709939/1‑140 (MQ=255)
          cgTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGACCATGTTATTTCTCCAGTTGCGTTGCAt                                                                                                                              >  2:135792/1‑140 (MQ=255)
            ttGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTg                                                                                                                            >  1:113905/1‑140 (MQ=255)
             tGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGt                                                                                                                           <  1:155450/140‑1 (MQ=255)
              gCGGTTCTTTTTAAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGtt                                                                                                                          <  2:1795049/140‑1 (MQ=255)
              gCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGtt                                                                                                                          <  2:534714/140‑1 (MQ=255)
              gCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGtt                                                                                                                          <  1:2071927/140‑1 (MQ=255)
               ggggatttttttAAAATTTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGtt                                                                                                                          <  2:735720/133‑1 (MQ=255)
                 gATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCa                                                                                                                       <  1:1889745/140‑1 (MQ=255)
                  aTCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCAt                                                                                                                      <  1:1709939/140‑1 (MQ=255)
                  aTCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCAt                                                                                                                      <  2:340093/140‑1 (MQ=255)
                   tttttttaAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCAtt                                                                                                                     <  2:389900/137‑1 (MQ=255)
                   tctttttaAAAA‑TTCCCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCAtt                                                                                                                     <  2:2203068/137‑1 (MQ=255)
                    cATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTa                                                                                                                    >  2:2430526/1‑140 (MQ=255)
                       ttttAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAata                                                                                                                 <  1:782366/140‑1 (MQ=255)
                         ttAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGGGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATg                                                                                                               <  1:705143/140‑1 (MQ=255)
                         ttAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTg                                                                                                                            >  1:980028/1‑127 (MQ=255)
                         ttAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATg                                                                                                               >  2:813234/1‑140 (MQ=255)
                         ttAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATg                                                                                                               <  1:1649248/140‑1 (MQ=255)
                          tAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGa                                                                                                              <  1:2430526/140‑1 (MQ=255)
                              a‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAgtgt                                                                                                          <  2:2271455/140‑1 (MQ=255)
                                  aCCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGtgttgt                                                                                                       >  1:1459428/1‑140 (MQ=255)
                                  aCCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTC‑CCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTtgtg                                                                                                      >  2:1243755/1‑140 (MQ=255)
                                          tATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGac                                                                                               <  1:564797/140‑1 (MQ=255)
                                          tATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTC‑CCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGaca                                                                                              <  1:1243755/140‑1 (MQ=255)
                                           aTGCTGACCGGCTTTACCGCCTGCGTCGGATGCCTTCTCCCGGTCTTCGGCGAAATTTCCTTGACCCCCACCATGTTCCGCCATGTTATTTCTCCAGTTGCGTTGCAATGTTTCATTAATATGAGTGTTGTGTTTTGaca                                                                                              <  2:2044539/140‑1 (MQ=255)
                                                 aCCGCCTTTATGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCAtt                                                                                        >  2:2810524/1‑140 (MQ=255)
                                                 aCCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGtgttgt                                                                                                       <  2:582501/125‑1 (MQ=255)
                                                 aCCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGaca                                                                                              <  2:2625525/134‑1 (MQ=255)
                                                 aCCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCAtt                                                                                        >  1:1327272/1‑140 (MQ=255)
                                                 aCCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCAtt                                                                                        >  1:1573170/1‑140 (MQ=255)
                                                    gCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTaaa                                                                                     >  1:1669545/1‑140 (MQ=255)
                                                      cTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAAt                                                                                   >  1:1018704/1‑140 (MQ=255)
                                                            ggCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCg                                                                             <  2:943720/140‑1 (MQ=255)
                                                            ggCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCg                                                                             <  1:1874484/140‑1 (MQ=255)
                                                                 gCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAAt                                                                        <  2:2748358/140‑1 (MQ=255)
                                                                  cGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATg                                                                       >  1:35877/1‑140 (MQ=255)
                                                                      ggATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGaa                                                                   <  1:1172257/140‑1 (MQ=255)
                                                                       gATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAAt                                                                  <  2:1593440/140‑1 (MQ=255)
                                                                            cTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTc                                                             >  2:2119341/1‑140 (MQ=255)
                                                                             ttCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCa                                                            >  2:1491040/1‑140 (MQ=255)
                                                                              tctcACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCaa                                                           >  2:1781429/1‑140 (MQ=255)
                                                                               ctcACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGTGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATgaga                                                                    >  2:677529/1‑130 (MQ=255)
                                                                               ctcACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGTGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATgaga                                                                    <  1:677529/130‑1 (MQ=255)
                                                                                      tCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAgcg                                                   >  2:2059450/1‑140 (MQ=255)
                                                                                       cTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAgcgc                                                  <  1:251845/140‑1 (MQ=255)
                                                                                       cTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAgcgc                                                  <  2:35877/140‑1 (MQ=255)
                                                                                       cTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAgcgc                                                  <  1:2768366/140‑1 (MQ=255)
                                                                                        ttCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCa                                                 >  1:129149/1‑140 (MQ=255)
                                                                                        ttCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCa                                                 >  1:1395311/1‑140 (MQ=255)
                                                                                         tCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCaa                                                <  2:2787605/140‑1 (MQ=255)
                                                                                         tCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCaa                                                <  1:2090114/140‑1 (MQ=255)
                                                                                          cGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAAc                                               >  1:2357759/1‑140 (MQ=255)
                                                                                            gCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTAGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACga                                             <  1:2317744/140‑1 (MQ=255)
                                                                                             cGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACgag                                            <  2:1425339/140‑1 (MQ=255)
                                                                                                    tCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATag                                     <  2:348928/140‑1 (MQ=255)
                                                                                                    tCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATag                                     <  1:1491040/140‑1 (MQ=255)
                                                                                                    tCCTGAACCACCACGATGTTCGACCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATag                                     <  1:135792/140‑1 (MQ=255)
                                                                                                        gAACCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAggg                                 <  1:1231071/140‑1 (MQ=255)
                                                                                                         aaCCACCACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGa                                <  2:1729620/140‑1 (MQ=255)
                                                                                                          accaccACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGaa                               <  1:1062004/140‑1 (MQ=255)
                                                                                                          accaccACGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGaa                               <  2:1319063/140‑1 (MQ=255)
                                                                                                           ccaccaCGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGaaa                              >  2:1339728/1‑140 (MQ=255)
                                                                                                              ccacGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATagag                                   <  2:515321/132‑1 (MQ=255)
                                                                                                                acGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAatata                         <  1:1106060/140‑1 (MQ=255)
                                                                                                                acGATGTTCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAatata                         <  1:2687876/140‑1 (MQ=255)
                                                                                                                      ttCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGa                   >  1:1954681/1‑140 (MQ=255)
                                                                                                                      ttCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGa                   >  1:51834/1‑140 (MQ=255)
                                                                                                                      ttCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGa                   >  1:530295/1‑140 (MQ=255)
                                                                                                                      ttCGGCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGa                   >  1:840610/1‑140 (MQ=255)
                                                                                                                         ggCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGa                <  2:2158564/140‑1 (MQ=255)
                                                                                                                         ggCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGa                <  1:1721207/140‑1 (MQ=255)
                                                                                                                         ggCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGa                <  1:2059450/140‑1 (MQ=255)
                                                                                                                         ggCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGa                <  2:1874944/140‑1 (MQ=255)
                                                                                                                         ggCCATGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGa                <  2:2357759/140‑1 (MQ=255)
                                                                                                                              tGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGAACAtt           >  2:1624234/1‑140 (MQ=255)
                                                                                                                              tGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGAACAtt           <  2:1954681/140‑1 (MQ=255)
                                                                                                                              tGTTATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGAACAtt           <  2:2133746/140‑1 (MQ=255)
                                                                                                                                ttATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATAtt                       >  2:1929265/1‑126 (MQ=255)
                                                                                                                                 tATTTCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGAACATTCTg        <  2:1049372/140‑1 (MQ=255)
                                                                                                                                   tttCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGAACATTCTGGa      <  1:2018567/140‑1 (MQ=255)
                                                                                                                                    ttCTCCAGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGAACATTCTGGat     <  2:462203/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                        
TTCAGATGCGCGTTGCGGATCATTTTTAAAA‑TTACCGCCGCTATGCTGACCGCCTTTACGGCCTGCGTCGGATGCCTTCTCACGGTCTTCGGCGAAATTTCCTGAACCACCACGATGTTCGGCCATGTTATTTCTCCCGTTGCGTTGCATTGTTTCATTAATATGAGTGTTGTGTGTCGACACTCATTAAAATTAGTCGCTAATGAGAATTAGTCAAATTAAGCGCAACGAGAAGATAGAGGGAAAATATATTTTGAGGAACATTCTGGATATA  >  NC_000913/1315910‑1316183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑