Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,044,084 C→A intergenic (+40/‑115) dsbA → / → yihF thiol:disulfide oxidoreductase DsbA/uncharacterized protein YihF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,044,0840CA99.1% 393.2 / NA 110intergenic (+40/‑115)dsbA/yihFthiol:disulfide oxidoreductase DsbA/uncharacterized protein YihF
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base A (62/47);  total (63/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 110 total aligned reads displayed.

AGCTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACA  >  NC_000913/4043953‑4044219
                                                                                                                                   |                                                                                                                                       
aGCTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTtta                                                                                                                                 >  2:587706/1‑140 (MQ=255)
  cTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTttatt                                                                                                                               >  2:438787/1‑140 (MQ=255)
  cTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTttatt                                                                                                                               >  1:609049/1‑140 (MQ=255)
     aaTCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTattatt                                                                                                                            >  1:1310032/1‑140 (MQ=255)
       tCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTtta                                                                                                                                 <  2:1748159/133‑1 (MQ=255)
       tCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTta                                                                                                                          >  2:1837392/1‑140 (MQ=255)
        ccGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaa                                                                                                                         >  1:970172/1‑140 (MQ=255)
          gCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       <  2:884398/140‑1 (MQ=255)
          gCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       <  1:1113271/140‑1 (MQ=255)
          gCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       <  2:669124/140‑1 (MQ=255)
          gCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       <  2:609049/140‑1 (MQ=255)
          gCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       <  1:1300220/140‑1 (MQ=255)
            aGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       >  2:952518/1‑138 (MQ=255)
            aGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       <  1:952518/138‑1 (MQ=255)
            aGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTaataaa                                                                                                                     >  2:647559/1‑140 (MQ=255)
            aGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTaataaa                                                                                                                     >  2:1391777/1‑140 (MQ=255)
                tATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTaataaata                                                                                                                   <  1:866808/138‑1 (MQ=255)
                tATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTaataaata                                                                                                                   >  2:866808/1‑138 (MQ=255)
                      tACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       >  1:518540/1‑128 (MQ=255)
                      tACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACa                                                                                                           <  1:620258/140‑1 (MQ=255)
                        ccAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       <  2:1086141/126‑1 (MQ=255)
                        ccAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTtaata                                                                                                                       >  1:1086141/1‑126 (MQ=255)
                        ccAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAataaatataaa                                                                                                               <  2:1109968/134‑1 (MQ=255)
                        ccAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAataaatataaa                                                                                                               >  1:1109968/1‑134 (MQ=255)
                        ccAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACAtt                                                                                                         >  1:1943121/1‑140 (MQ=255)
                        ccAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACAtt                                                                                                         >  1:674736/1‑140 (MQ=255)
                         cAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTc                                                                                                        <  1:1391777/140‑1 (MQ=255)
                         cAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTc                                                                                                        >  1:5443/1‑140 (MQ=255)
                          aGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCt                                                                                                       >  1:203998/1‑140 (MQ=255)
                          aGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCt                                                                                                       >  2:1739810/1‑140 (MQ=255)
                               tatGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATaa                                                                                                  >  2:1574642/1‑140 (MQ=255)
                               tatGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATaa                                                                                                  >  2:888394/1‑140 (MQ=255)
                                 tGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATaa                                                                                                  <  1:298234/138‑1 (MQ=255)
                                 tGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATaa                                                                                                  >  2:298234/1‑138 (MQ=255)
                                 tGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATg                                                                                                >  2:1615991/1‑140 (MQ=255)
                                   gATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCa                                                                                              >  2:165129/1‑140 (MQ=255)
                                         tttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGc                                                                                        >  1:1237340/1‑140 (MQ=255)
                                         tttGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGc                                                                                        >  2:334259/1‑140 (MQ=255)
                                             ttCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCt                                                                                    <  1:647559/140‑1 (MQ=255)
                                              tCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGTTg                                                                                   <  2:370539/140‑1 (MQ=255)
                                                 gcagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGAc                                                                                >  2:269521/1‑140 (MQ=255)
                                                  cagTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACa                                                                               <  1:165129/140‑1 (MQ=255)
                                                        gCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTAttt                                                                         <  1:1739810/140‑1 (MQ=255)
                                                            aTACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGc                                                                     >  2:616699/1‑140 (MQ=255)
                                                            aTACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGc                                                                     >  1:1577761/1‑140 (MQ=255)
                                                             tACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCa                                                                    <  1:550800/140‑1 (MQ=255)
                                                             tACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCa                                                                    >  2:594560/1‑140 (MQ=255)
                                                               cAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATa                                                                  >  2:1139101/1‑140 (MQ=255)
                                                               cAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATa                                                                  >  1:565676/1‑140 (MQ=255)
                                                               cAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATa                                                                  >  2:1681293/1‑140 (MQ=255)
                                                               cAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATa                                                                  >  2:782503/1‑140 (MQ=255)
                                                                 gTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAg                                                                >  1:252197/1‑140 (MQ=255)
                                                                  tGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGt                                                               >  1:1836828/1‑140 (MQ=255)
                                                                  tGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGt                                                               >  2:551323/1‑140 (MQ=255)
                                                                    aaaTATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTgg                                                             <  1:1968519/140‑1 (MQ=255)
                                                                    aaaTATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTgg                                                             >  1:1379307/1‑140 (MQ=255)
                                                                       tatCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTAttt                                                                         <  1:1415100/125‑1 (MQ=255)
                                                                          cTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTc                                                       >  1:245506/1‑140 (MQ=255)
                                                                            gTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCaa                                                     >  2:34033/1‑140 (MQ=255)
                                                                            gTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCaa                                                     >  2:910941/1‑140 (MQ=255)
                                                                            gTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCaa                                                     >  2:1312281/1‑140 (MQ=255)
                                                                            gTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCaa                                                     >  1:525220/1‑140 (MQ=255)
                                                                              ccGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAg                                                   >  1:346621/1‑140 (MQ=255)
                                                                                  gaAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGtttt                                               <  2:695227/140‑1 (MQ=255)
                                                                                  gaAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGtttt                                               <  2:245506/140‑1 (MQ=255)
                                                                                           atTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTa                                      <  2:525220/140‑1 (MQ=255)
                                                                                            ttCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTAt                                     <  2:252197/140‑1 (MQ=255)
                                                                                              cAATGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCa                                   <  1:1681293/140‑1 (MQ=255)
                                                                                                aTGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAgg                                 <  2:1379307/140‑1 (MQ=255)
                                                                                                aTGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAgg                                 <  1:438787/140‑1 (MQ=255)
                                                                                                aTGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAgg                                 <  1:888394/140‑1 (MQ=255)
                                                                                                 tGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAggg                                >  2:1561846/1‑140 (MQ=255)
                                                                                                 tGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAggg                                <  1:594560/140‑1 (MQ=255)
                                                                                                 tGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAggg                                >  1:642636/1‑140 (MQ=255)
                                                                                                 tGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAggg                                >  2:718016/1‑140 (MQ=255)
                                                                                                 tGTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAggg                                <  2:1268911/140‑1 (MQ=255)
                                                                                                  gTAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGa                               <  1:269521/140‑1 (MQ=255)
                                                                                                   tAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGaa                              <  2:264794/140‑1 (MQ=255)
                                                                                                   tAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGaa                              <  1:334259/140‑1 (MQ=255)
                                                                                                   tAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGaa                              <  1:1139101/140‑1 (MQ=255)
                                                                                                   tAAATTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGaa                              <  1:1471545/140‑1 (MQ=255)
                                                                                                    aaaTTACATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAat                             <  1:1574642/140‑1 (MQ=255)
                                                                                                          cATAAAGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTtat                       >  1:1434152/1‑140 (MQ=255)
                                                                                                             aaaGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATg                    <  2:346621/140‑1 (MQ=255)
                                                                                                             aaaGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATg                    >  1:1210009/1‑140 (MQ=255)
                                                                                                               aGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGa                               >  1:1575349/1‑127 (MQ=255)
                                                                                                               aGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGa                               <  2:1575349/127‑1 (MQ=255)
                                                                                                               aGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGAt                  >  1:678449/1‑140 (MQ=255)
                                                                                                               aGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGAt                  >  1:823964/1‑140 (MQ=255)
                                                                                                               aGCCCGTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGAt                  >  2:924513/1‑140 (MQ=255)
                                                                                                                    gTGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTa             >  2:62327/1‑140 (MQ=255)
                                                                                                                     tGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTaa            >  2:68840/1‑140 (MQ=255)
                                                                                                                     tGAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTaa            >  2:1153834/1‑140 (MQ=255)
                                                                                                                      gAATATTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAg           >  1:511364/1‑140 (MQ=255)
                                                                                                                          atTCACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAg       <  2:603042/140‑1 (MQ=255)
                                                                                                                           ttCACAGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGc      >  1:309550/1‑140 (MQ=255)
                                                                                                                             cACGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTa    <  1:62327/140‑1 (MQ=255)
                                                                                                                              aCGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTAc   >  2:1123746/1‑140 (MQ=255)
                                                                                                                              aCGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTAc   <  2:1577761/140‑1 (MQ=255)
                                                                                                                               cGGGATTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCATCTACa  >  1:1432036/1‑140 (MQ=255)
                                                                                                                                   |                                                                                                                                       
AGCTGAATCCGCAGGGTATGGATACCAGCAATATGGATGTTTTTGTTCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACA  >  NC_000913/4043953‑4044219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: