BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,191,032	C→T	T134I (ACC→ATC)	yqiI →	putative fimbrial protein YqiI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,191,032	0	C	T	100.0%	470.0 / NA	128	T134I (ACC→ATC)	yqiI	putative fimbrial protein YqiI
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (70/58); total (70/58)

Only 100 of 131 total aligned reads displayed.

GTTGTTAGCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTT  >  NC_000913/3190895‑3191165

 ttgttAGCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCtt                                                                                                                                    >  1:901698/1‑140 (MQ=255)

 ttgttAGCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCtt                                                                                                                                    >  1:335268/1‑140 (MQ=255)

 ttgttAGCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCtt                                                                                                                                    >  1:406044/1‑140 (MQ=255)

 ttgttAGCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCtt                                                                                                                                    >  2:1337308/1‑140 (MQ=255)

 ttgttAGCATCAGGCCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATACTGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCtt                                                                                                                                    >  2:1232021/1‑140 (MQ=255)

  tgttAGCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTc                                                                                                                                   >  2:575315/1‑140 (MQ=255)

   gttAGCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCg                                                                                                                                  >  1:485664/1‑140 (MQ=255)

      aGCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGa                                                                                                                               <  2:901698/140‑1 (MQ=255)

       gCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGaa                                                                                                                              <  2:1396758/140‑1 (MQ=255)

           cAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGc                                                                                                                          >  2:1230321/1‑140 (MQ=255)

           cAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGc                                                                                                                          <  1:257756/140‑1 (MQ=255)

           cAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAAT‑GGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCt                                                                                                                         >  1:1569286/1‑140 (MQ=255)

            aGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCt                                                                                                                         >  2:1314762/1‑140 (MQ=255)

              gTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTAc                                                                                                                       >  1:1501612/1‑140 (MQ=255)

                       tttATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGccc                                                                                                              <  1:119361/140‑1 (MQ=255)

                        ttATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCg                                                                                                             <  1:386603/140‑1 (MQ=255)

                        ttATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCg                                                                                                             >  1:214441/1‑140 (MQ=255)

                        ttATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCg                                                                                                             <  1:564950/140‑1 (MQ=255)

                        ttATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCg                                                                                                             >  2:1557492/1‑140 (MQ=255)

                          ataATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCa                                                                                                           <  1:1302055/140‑1 (MQ=255)

                          ataATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCa                                                                                                           <  1:575315/140‑1 (MQ=255)

                          ataATCAAAACCCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGAATCTACATCTCCACTCCCTATTGCAGCGCCTGTATGTGATGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCa                                                                                                           <  2:180896/140‑1 (MQ=255)

                            aaTCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGt                                                                                                         <  1:765274/140‑1 (MQ=255)

                                  aaCTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAg                                                                                                   >  2:100467/1‑140 (MQ=255)

                                     tctTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTgg                                                                                                <  2:1182398/140‑1 (MQ=255)

                                     tctTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTgg                                                                                                <  2:311133/140‑1 (MQ=255)

                                     tctTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTgg                                                                                                <  1:713103/140‑1 (MQ=255)

                                        tataCTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCgg                                                                                             >  2:249300/1‑140 (MQ=255)

                                         ataCTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGt                                                                                            >  2:1309391/1‑140 (MQ=255)

                                              ttCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGa                                                                                       >  1:580047/1‑140 (MQ=255)

                                               tCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGaa                                                                                      <  1:251889/140‑1 (MQ=255)

                                               tCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGaa                                                                                      >  1:39683/1‑140 (MQ=255)

                                               tCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGaa                                                                                      >  2:150443/1‑140 (MQ=255)

                                               tCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGaa                                                                                      <  2:48714/140‑1 (MQ=255)

                                                 ggTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAAcc                                                                                    >  2:1096668/1‑140 (MQ=255)

                                                 ggTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAAcc                                                                                    >  1:738564/1‑140 (MQ=255)

                                                  gtgtAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCg                                                                                   <  1:1230321/140‑1 (MQ=255)

                                                      aaCTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAAt                                                                               <  1:100467/140‑1 (MQ=255)

                                                               tGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTaa                                                                      >  2:408552/1‑140 (MQ=255)

                                                                   gTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCCATTTTTAGTAAAttt                                                                  >  2:399471/1‑140 (MQ=255)

                                                                   gTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAAACGCAATTATTAGTAAAttt                                                                  >  2:571160/1‑140 (MQ=255)

                                                                   gTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGGCCCGAAACCCCATTATAAATAAAttt                                                                  >  2:1332684/1‑140 (MQ=255)

                                                                      gATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGTCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTcc                                                               >  2:680698/1‑140 (MQ=255)

                                                                         tATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGt                                                            <  1:168412/140‑1 (MQ=255)

                                                                          aTGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTa                                                           <  1:265367/140‑1 (MQ=255)

                                                                           tGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTAc                                                          <  1:408552/140‑1 (MQ=255)

                                                                           tGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCCGAAACGCAATTATCAGTAACTTTTTCAGTAc                                                          >  1:606153/1‑140 (MQ=255)

                                                                            gATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGCAACCCCATTATCAATAACATTTTCCGTACg                                                         >  2:1636553/1‑140 (MQ=255)

                                                                              ttCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAg                                                       <  1:1087392/140‑1 (MQ=255)

                                                                              ttCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAg                                                       <  1:178325/140‑1 (MQ=255)

                                                                                cTACATCTCCACTACTTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     <  2:738564/140‑1 (MQ=255)

                                                                                cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGTCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     <  1:680698/140‑1 (MQ=255)

                                                                                cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     <  1:605236/140‑1 (MQ=255)

                                                                                cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     <  2:184017/140‑1 (MQ=255)

                                                                                cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     <  1:1191556/140‑1 (MQ=255)

                                                                                cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     <  1:571160/140‑1 (MQ=255)

                                                                                cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     <  1:294867/140‑1 (MQ=255)

                                                                                cTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     <  2:39683/140‑1 (MQ=255)

                                                                                 tACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGGTCTGAACCGCAATTATCAGTAAATTTTTCAGTACGAgggg                                                    >  2:1087392/1‑137 (MQ=255)

                                                                                  aCATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCa                                                   <  1:389414/140‑1 (MQ=255)

                                                                                   cATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTTCTGAAACGCAAATATCAGTAACTTTTTCAATACGAGGGCAg                                                  >  1:797304/1‑140 (MQ=255)

                                                                                   cATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCCATTATCAATAACTTTTTCCGTACGAgaggcg                                                  >  2:118108/1‑135 (MQ=255)

                                                                                    aTCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGc                                                 <  2:335268/140‑1 (MQ=255)

                                                                                     tctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                <  2:429132/140‑1 (MQ=255)

                                                                                     tctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                <  2:580047/140‑1 (MQ=255)

                                                                                     tctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                <  2:89822/140‑1 (MQ=255)

                                                                                     tctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                <  1:1030354/140‑1 (MQ=255)

                                                                                     tctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                <  1:899012/140‑1 (MQ=255)

                                                                                     tctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCt                                                <  1:150443/140‑1 (MQ=255)

                                                                                      ctcCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCta                                               <  1:329861/140‑1 (MQ=255)

                                                                                        ccACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     >  1:1249743/1‑132 (MQ=255)

                                                                                        ccACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTg                                                     <  2:1249743/132‑1 (MQ=255)

                                                                                        ccACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCtata                                             >  1:810405/1‑140 (MQ=255)

                                                                                        ccACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAAACGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCtata                                             >  1:1431629/1‑140 (MQ=255)

                                                                                         cACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTTTCAATAAATTTTTCCATACGAGGGGGGCtataa                                            >  2:192392/1‑139 (MQ=255)

                                                                                         cACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGc                                                 <  2:906423/135‑1 (MQ=255)

                                                                                         cACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGc                                                 >  1:906423/1‑135 (MQ=255)

                                                                                         cACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCtatat                                            >  1:1040139/1‑140 (MQ=255)

                                                                                         cACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCACAGTCTGTAGTGGCGGTCCTGAACCGCAATTATTAGTAACATTTCCCGTACGAGGGCAGCtatat                                            >  2:895286/1‑140 (MQ=255)

                                                                                             aCCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATTAAGAACCTTTTCCGGACGAGTACGCCCATATATTa                                        >  2:329861/1‑140 (MQ=255)

                                                                                               cTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAag                                      <  2:214441/140‑1 (MQ=255)

                                                                                                 aTTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCGGCAGTCTGTAGTGGCGGTCCTGAAACGCCATTATTAGTAACTTTTTCCGTACGAGGGGAGCTAAATATTAaact                                    >  2:1167958/1‑140 (MQ=255)

                                                                                                 aTTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCCGAACCGCAATTATCAGTAAATTTTTCCGTACGAGGGCAGCTATATATTAaact                                    >  2:718432/1‑140 (MQ=255)

                                                                                                  ttGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTTTCAATAACTTTTTCAGTACGGGGGGCGCTATATATTAaacta                                   >  1:404550/1‑140 (MQ=255)

                                                                                                   tGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCCCCATTATCAGTAAATTTTTCCGTACGAGTGGAGCTATATAtttaacctg                                  >  2:280492/1‑133 (MQ=255)

                                                                                                        caCCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCCCAATTATCACGAACCTTTCCACTAAAAGCGGAGGTATATATTTAGATAGCTaaa                             >  2:799590/1‑140 (MQ=255)

                                                                                                        caCCTGTATGTATTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAAACGCCATTATCAGTAAATTTTTCAATACGAGGGCAGCTATATATTAAACTAACTaaa                             >  2:1637718/1‑140 (MQ=255)

                                                                                                                 gtatTGATATAAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAAt                    <  2:535369/140‑1 (MQ=255)

                                                                                                                        tataAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATTAGTAAATTTTTCAGTAAGAGGGCAGCTATATATTAAGCTAGCTAAAAAAACCaaaaaaaaaa             >  2:553000/1‑136 (MQ=255)

                                                                                                                        tataAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAAACTTTTCAGTACGAGGGCAGCTATATATTAAACTAGCTAAAAAAACCaaaaaaaaaa             >  2:40950/1‑136 (MQ=255)

                                                                                                                        tataAAGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCCGAACCCCAATTATCAGAAAACTTTTCAGTACGAGGGCCGCTATATATTAAGCTAGCTAAAAAAGCCaataaaataa             >  2:1138002/1‑140 (MQ=255)

                                                                                                                             aGGGAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGtaaataaa        <  1:1332684/140‑1 (MQ=255)

                                                                                                                                gAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATaaaaaa     <  2:1590736/140‑1 (MQ=255)

                                                                                                                                gAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATaaaaaa     <  2:522610/140‑1 (MQ=255)

                                                                                                                                gAGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATaaaaaa     <  2:1431629/140‑1 (MQ=255)

                                                                                                                                 aGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTTCCGAAACGCAATTAAAAATAAATTTTTCATACCCAGGGGCGCCATATAATAAAATAGCTTAAAAAACCAAAAAAATAAATaaaaaaa    >  2:359883/1‑139 (MQ=255)

                                                                                                                                 aGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTGCTGAACCGCACTTATCCCAAAAATTTCCCTTAAGAGGGCAGCCATATATTAAGCTATCTAAAAAAGACCCTAAAATAAATaaaaaaa    >  2:182616/1‑139 (MQ=255)

                                                                                                                                 aGCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCCGGACCGCAATTATTAATAAATTTTTCAGTACGAGGGCAGCTATATATTAAGCTAGCTAAAAAAAACAATAAAATAAATaaaaaaa    >  2:1398123/1‑139 (MQ=255)

                                                                                                                                  gCCGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAAACGCCATTATCAATAAATTTTTCAGTACGAGGGCAGCTATATATTAAACTAGCTAAAAAAACCAATAAAATAAATaaaaaaaa   >  2:1568608/1‑138 (MQ=255)

                                                                                                                                   ccGGAATCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAATAACTTTTTCAGTACGAGGGCAGCTATATATTAAACTAGCTAAAAAAACCAATAAAATAAAAAAAAAAAtt  >  2:944404/1‑140 (MQ=255)

GTTGTTAGCATCAGGTCAAGACTTTTATAATCAAAACTCTTATACTTTCGGTGTAACTTATAATGGGGTTGATTATGATTCTACATCTCCACTACCTATTGCAGCACCTGTATGTATTGATATAAAGGGAGCCGGAACCTTCGGGAATGGCTACAAAAAGCCCGCAGTCTGTAGTGGCGGTCCTGAACCGCAATTATCAGTAACTTTTCCAGTACGAGTGCAGCTATATATTAAGCTAGCTAAAAATGCCAATAAAGTAAATAAAAAACTT  >  NC_000913/3190895‑3191165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`