BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,253,440	C→A	S838I (AGC→ATC)	ycgV ←	putative autotransporter adhesin YcgV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,253,440	0	C	A	100.0%	432.9 / NA	120	S838I (AGC→ATC)	ycgV	putative autotransporter adhesin YcgV
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (57/63); total (57/63)

Only 100 of 122 total aligned reads displayed.

CATAGACATTCAGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTC  >  NC_000913/1253303‑1253576

caTAGACATTCAGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGAtg                                                                                                                                        <  2:1692838/140‑1 (MQ=255)

    gACATTCAGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGAtgtatg                                                                                                                                    >  2:95185/1‑140 (MQ=255)

     aCATTCAGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGatgtatgt                                                                                                                                   >  1:1114204/1‑140 (MQ=255)

        ttCAGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAg                                                                                                                                >  2:1005509/1‑140 (MQ=255)

        ttCAGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAg                                                                                                                                <  2:1660276/140‑1 (MQ=255)

          cAGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCt                                                                                                                              >  2:639815/1‑140 (MQ=255)

          cAGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCt                                                                                                                              >  2:42646/1‑140 (MQ=255)

           aGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTg                                                                                                                             >  1:523979/1‑140 (MQ=255)

             ctggctgTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTggg                                                                                                                           >  2:1564011/1‑140 (MQ=255)

               ggctgTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGtt                                                                                                                         >  2:1660281/1‑140 (MQ=255)

               ggctgTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGtt                                                                                                                         >  2:47098/1‑140 (MQ=255)

               ggctgTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGtt                                                                                                                         >  2:1251433/1‑140 (MQ=255)

                gctgTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGttt                                                                                                                        >  1:372939/1‑140 (MQ=255)

                 ctgTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTg                                                                                                                       <  2:1687619/140‑1 (MQ=255)

                 ctgTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTg                                                                                                                       <  2:915892/140‑1 (MQ=255)

                 ctgTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTg                                                                                                                       <  1:872219/140‑1 (MQ=255)

                 ctgTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTg                                                                                                                       <  2:624455/140‑1 (MQ=255)

                   gTTGTCTGCGGTGATGTCATAACTCATTATCATGCTGGCACGCCCCAGCACCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCg                                                                                                                     <  2:1197901/140‑1 (MQ=255)

                   gTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCg                                                                                                                     <  1:95185/140‑1 (MQ=255)

                   gTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCg                                                                                                                     <  1:870179/140‑1 (MQ=255)

                   gTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCg                                                                                                                     <  1:577454/140‑1 (MQ=255)

                   gTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCg                                                                                                                     <  1:42646/140‑1 (MQ=255)

                   gTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCg                                                                                                                     <  2:194874/140‑1 (MQ=255)

                    ttGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCgg                                                                                                                    <  1:820737/140‑1 (MQ=255)

                    ttGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCgg                                                                                                                    <  1:672832/140‑1 (MQ=255)

                    ttGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCgg                                                                                                                    <  2:970899/140‑1 (MQ=255)

                    ttGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCgg                                                                                                                    <  1:1251433/140‑1 (MQ=255)

                    ttGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCgg                                                                                                                    <  1:1674359/140‑1 (MQ=255)

                      gCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGct                                                                                                                  <  1:1005509/140‑1 (MQ=255)

                      gCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGct                                                                                                                  <  2:1114204/140‑1 (MQ=255)

                      gCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGct                                                                                                                  <  2:1512802/140‑1 (MQ=255)

                      gCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGct                                                                                                                  <  1:1660281/140‑1 (MQ=255)

                      gCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGct                                                                                                                  <  1:639815/140‑1 (MQ=255)

                      gCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGct                                                                                                                  <  1:47098/140‑1 (MQ=255)

                       ccTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGctc                                                                                                                 <  1:160029/140‑1 (MQ=255)

                          gCGGTGATGTCATACCCC‑GTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCtata                                                                                                             <  1:1342896/140‑1 (MQ=255)

                              tGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAg                                                                                                          <  1:982324/140‑1 (MQ=255)

                              tGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAg                                                                                                          <  2:1383235/140‑1 (MQ=255)

                                aTGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGaa                                                                                                        <  2:1215820/140‑1 (MQ=255)

                                 tGTCATACCCCAGTATCATGCTGGTACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATTTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAAc                                                                                                       <  2:319966/140‑1 (MQ=255)

                                        ccccAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAAc                                                                                                <  2:516563/140‑1 (MQ=255)

                                        ccccAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAAc                                                                                                <  1:1569048/140‑1 (MQ=255)

                                             gTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTa                                                                                           <  1:1564011/140‑1 (MQ=255)

                                             gTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTa                                                                                           >  1:1486317/1‑140 (MQ=255)

                                                tCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAggg                                                                                        <  2:1571733/140‑1 (MQ=255)

                                                  aTGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGa                                                                                      <  1:961452/140‑1 (MQ=255)

                                                   tGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGa                                                                                      <  2:1670012/139‑1 (MQ=255)

                                                   tGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGa                                                                                      >  1:1670012/1‑139 (MQ=255)

                                                   tGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGAc                                                                                     >  1:1509839/1‑140 (MQ=255)

                                                   tGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGAc                                                                                     >  2:7001/1‑140 (MQ=255)

                                                   tGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGAc                                                                                     >  2:1402122/1‑140 (MQ=255)

                                                   tGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGAc                                                                                     >  1:477070/1‑140 (MQ=255)

                                                        gCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTGTATAGAACCCATAACCAg                                                                                             <  1:1342465/127‑1 (MQ=255)

                                                        gCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTGTATAGAACCCATAACCAg                                                                                             >  2:1342465/1‑127 (MQ=255)

                                                        gCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAAc                                                                                                <  2:321031/124‑1 (MQ=255)

                                                        gCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAAc                                                                                                >  1:321031/1‑124 (MQ=255)

                                                        gCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGtt                                                                                >  1:746405/1‑140 (MQ=255)

                                                        gCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGtt                                                                                >  2:596560/1‑140 (MQ=255)

                                                           cGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGaa                                                                             >  1:780254/1‑140 (MQ=255)

                                                              cccAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACct                                                                          >  2:70276/1‑140 (MQ=255)

                                                                       gATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGc                                                                 <  2:1237266/140‑1 (MQ=255)

                                                                        aTTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTTTGCCCGGCt                                                                >  2:697064/1‑140 (MQ=255)

                                                                        aTTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGc                                                                 <  2:1057263/139‑1 (MQ=255)

                                                                        aTTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGc                                                                 >  1:1057263/1‑139 (MQ=255)

                                                                        aTTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCt                                                                >  1:615880/1‑140 (MQ=255)

                                                                            gTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCa                                                            <  2:615880/140‑1 (MQ=255)

                                                                                tGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGga                                                        <  1:7001/140‑1 (MQ=255)

                                                                                     cAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGc                                                   >  1:911089/1‑140 (MQ=255)

                                                                                        aTGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGc                                                                 >  1:912906/1‑123 (MQ=255)

                                                                                          gTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcatt                                              >  1:230925/1‑140 (MQ=255)

                                                                                             tatTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattcca                                           >  1:1560200/1‑140 (MQ=255)

                                                                                                  aGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGc                                      >  1:1528394/1‑140 (MQ=255)

                                                                                                  aGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGc                                      >  1:1026265/1‑140 (MQ=255)

                                                                                                  aGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGc                                      >  2:914892/1‑140 (MQ=255)

                                                                                                   ggCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCa                                     >  2:690361/1‑140 (MQ=255)

                                                                                                    gCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAg                                    >  1:1243971/1‑140 (MQ=255)

                                                                                                    gCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAg                                    >  1:1529903/1‑140 (MQ=255)

                                                                                                    gCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAg                                    >  1:43132/1‑140 (MQ=255)

                                                                                                       aTTACTCGCCTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGc                                 >  2:896060/1‑140 (MQ=255)

                                                                                                               ccTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCg                               >  1:1491976/1‑134 (MQ=255)

                                                                                                               ccTTCATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCg                               <  2:1491976/134‑1 (MQ=255)

                                                                                                                   cATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTaa                     >  1:285527/1‑140 (MQ=255)

                                                                                                                   cATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTaa                     <  2:238499/140‑1 (MQ=255)

                                                                                                                   cATAGTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTaa                     >  2:1504296/1‑140 (MQ=255)

                                                                                                                       gTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGcc                 <  2:1486317/140‑1 (MQ=255)

                                                                                                                       gTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGcc                 <  2:412437/140‑1 (MQ=255)

                                                                                                                       gTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGcc                 <  1:1271305/140‑1 (MQ=255)

                                                                                                                       gTCATCTCATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGcc                 <  1:1504296/140‑1 (MQ=255)

                                                                                                                            ctcATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgttgt            >  2:1159491/1‑140 (MQ=255)

                                                                                                                            ctcATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgttgt            >  1:566264/1‑140 (MQ=255)

                                                                                                                              cATTCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTc          <  2:1391994/140‑1 (MQ=255)

                                                                                                                                 tCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGa       <  2:1560200/140‑1 (MQ=255)

                                                                                                                                 tCTGGTGGATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGa       <  1:203526/140‑1 (MQ=255)

                                                                                                                                     gtggATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGt   >  1:987914/1‑140 (MQ=255)

                                                                                                                                     gtggATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGt   >  2:408269/1‑140 (MQ=255)

                                                                                                                                     gtggATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGt   >  1:1027016/1‑140 (MQ=255)

                                                                                                                                      tggATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTc  >  2:1225263/1‑140 (MQ=255)

                                                                                                                                      tggATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTc  >  2:1267634/1‑140 (MQ=255)

                                                                                                                                      tggATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTc  <  2:1495039/140‑1 (MQ=255)

                                                                                                                                      tggATGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTc  <  2:1587507/140‑1 (MQ=255)

CATAGACATTCAGCTGGCTGTTGCCTGCGGTGATGTCATACCCCAGTATCATGCTGGCACGCCCCAGCAGCGATTCGTAGTGATTCAGATGTATATTGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTC  >  NC_000913/1253303‑1253576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`