Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG33.3% 385.9 / 25.8 194T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (38/90);  new base G (64/0);  total (104/90)
Fisher's exact test for biased strand distribution p-value = 2.11e-24
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 203 total aligned reads displayed.

AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568367‑4568641
                                                                                                                                         |                                                                                                                                            
agGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaa                                                                                                                                            >  1:114527/1‑140 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                   <  2:114527/140‑1 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                   <  1:1457886/140‑1 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaaatg                                                                                                                                   >  2:2619476/1‑136 (MQ=255)
            gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                <  2:1129055/140‑1 (MQ=255)
            gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                <  2:472356/140‑1 (MQ=255)
            gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                <  2:1693680/140‑1 (MQ=255)
             aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                                               <  1:883215/140‑1 (MQ=255)
              cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                              <  2:1612619/140‑1 (MQ=255)
                  ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa                                                                                                                                       >  2:1183938/1‑127 (MQ=255)
                   gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                                                                                                                                          <  2:2816595/123‑1 (MQ=255)
                   gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCaaaaaaaa                                                                                                                         >  2:89393/1‑140 (MQ=255)
                       tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATAaaaaaaaaa                                                                                                                     >  2:124023/1‑139 (MQ=255)
                          aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                  <  2:2439233/140‑1 (MQ=255)
                          aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                  <  1:3060916/140‑1 (MQ=255)
                               cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑c                                                                                                            <  1:969511/140‑1 (MQ=255)
                                 tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTTT‑CCg                                                                                                          >  1:266879/1‑140 (MQ=255)
                                 tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAACCCTTTT‑CCg                                                                                                          >  2:1742363/1‑140 (MQ=255)
                                     acaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAACAAAAAAAACCTTGT‑CCGga‑g‑a                                                                                                    >  1:1064785/1‑140 (MQ=255)
                                       aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACAGGGGATAACAAACAAATCCTTCT‑CCgggggac                                                                                                    >  2:521275/1‑135 (MQ=255)
                                        ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AAcc                                                                                                 >  1:2409087/1‑140 (MQ=255)
                                        ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCAAAAAAAACAAAACCCTGT‑CCCGG‑G‑AAcc                                                                                                 >  2:1314257/1‑140 (MQ=255)
                                        ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAACAAACAACTCCTTTT‑CCCGA‑G‑AAcc                                                                                                 >  2:1079494/1‑140 (MQ=255)
                                          gacagtCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AAcccc                                                                                               <  1:956842/135‑1 (MQ=255)
                                          aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AAcccc                                                                                               <  1:2726830/140‑1 (MQ=255)
                                           aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCa                                                                                              <  2:2047357/140‑1 (MQ=255)
                                           aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCCCTTT‑CCGGA‑G‑AAccccc                                                                                              >  1:433293/1‑139 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCATAACAAAAAACTCCTTGT‑CCGGA‑G‑AACCCCAACg                                                                                           >  1:261394/1‑140 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAAAAACCCCCTTT‑CCCGG‑G‑AAACCCaaag                                                                                           >  2:419714/1‑138 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCCTGT‑CCGGA‑G‑AACCCCAACggg                                                                                         >  1:2447722/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAAAAACACCTTGT‑CCGGA‑G‑AACCCCCACcgg                                                                                         >  1:387337/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCCACgggg                                                                                        >  1:2979609/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACgggg                                                                                        >  1:1056755/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCCTTGT‑CCGGA‑G‑AAACCCAACgggg                                                                                        >  2:2711605/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGCATAAAAAAAAAATCCCTGT‑CCGGG‑G‑AAACCCAACgggg                                                                                        >  2:534882/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAAAAAAAAAGTGGGATAAAAAAAAACTCCCTTT‑CCGGA‑G‑AAACCCAACgggg                                                                                        >  1:1997123/1‑140 (MQ=255)
                                                   aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAAATCCTTGT‑CCGGA‑G‑AACCCCCACggggga                                                                                      >  1:1251847/1‑138 (MQ=255)
                                                   aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGCCAACAAACAAACCCTTGT‑CCGGG‑G‑GACCCCAAcccggga                                                                                      >  2:2403811/1‑134 (MQ=255)
                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGCGGCATAACAAAAAAACCCTTTT‑CCGGA‑G‑AACCCCCACGGGGgaaa                                                                                    >  1:2235542/1‑140 (MQ=255)
                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGGCTAAAAAACAAAACCTTGT‑CCGGG‑G‑GACCCCCACGGGGgaaa                                                                                    >  2:2905431/1‑140 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACg                                                                                  <  2:774739/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACg                                                                                  <  1:123300/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACg                                                                                  <  1:1172012/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACg                                                                                  <  1:1514313/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACg                                                                                  <  1:1314257/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACg                                                                                  <  2:1003311/140‑1 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAACAAACAACTCCTTGT‑CCGGG‑G‑AACCCCCACGGGGGAAACGaa                                                                                >  1:624748/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAAAAAACAACAACTTGT‑CCGGAGG‑AACCCCAACGGGGaaaagaa                                                                                 >  2:810072/1‑137 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGaaa                                                                               >  1:1789287/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACACGGCATAACAAAAAACCCCTTGT‑CCGGG‑G‑AAACCCCACGGGGAAAAAGaaa                                                                               >  1:84009/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGGAAACGaaa                                                                               >  1:916533/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACACCCTGT‑CCGGG‑G‑AACCCCCACGGGGGAAAAGaaa                                                                               >  2:1503595/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGACAAACAAAAAACTCCTTTT‑CCCGA‑G‑AACCCCAACCGGGGAAAAGaaa                                                                               >  2:2784004/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAAACCCTGT‑CCCGG‑G‑AACCCCAACGGGGGAAAAGaaa                                                                               >  2:2226231/1‑140 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACTCCTTTT‑CCGGA‑G‑AACCCCAACGGGGGAAACGAAAATCaa                                                                          >  1:1141426/1‑140 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAAAACCCTGT‑CCCGA‑G‑AACCCCCACGGGGGAAAAGAAAATCaa                                                                          >  2:2988605/1‑140 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCg                                                                     <  1:821530/140‑1 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGGTAACAAAAAACCCCCTGTCCCGGG‑G‑AGCCCAAAAGGGGAAAA‑GAAAATCAAAAccc                                                                     >  2:264552/1‑139 (MQ=255)
                                                                     cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGt                                                                    <  1:1002968/140‑1 (MQ=255)
                                                                     cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGt                                                                    <  1:1383332/140‑1 (MQ=255)
                                                                     cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAAAAAACAAACCCTTTT‑CCTGA‑G‑GAACCCAACAGGGGAAAAGAAAATCaaaaacct                                                                    >  2:119997/1‑134 (MQ=255)
                                                                           aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                              <  1:2697683/140‑1 (MQ=255)
                                                                           aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGGGTAACAAAAAACTCCTTGT‑CCCGAGG‑AACCCAAACGGGG‑AAACAAAACTTAAAACCGTCGGGaa                                                              >  2:2525741/1‑140 (MQ=255)
                                                                           aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGAAAAAAAACAAACCCTTGT‑CCGGG‑GAAACCCAAACGGGGAAAA‑AAAATTCAATAACGTCGGGaa                                                              >  2:1799204/1‑140 (MQ=255)
                                                                                cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                         <  2:1154822/140‑1 (MQ=255)
                                                                                cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                         <  1:2637895/140‑1 (MQ=255)
                                                                                  gcaAAGTCATACAAAATCAACGCCATCGGGAAACACTGCCCGGCGACTTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                       <  2:2664052/140‑1 (MQ=255)
                                                                                  gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                       <  1:683027/140‑1 (MQ=255)
                                                                                   caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      <  1:2814187/140‑1 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  2:2938181/140‑1 (MQ=255)
                                                                                        tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  2:1060898/140‑1 (MQ=255)
                                                                                              aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:1212867/140‑1 (MQ=255)
                                                                                                 aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAAGGCATAAAAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGGAAAAAAAAATTAATACCCGCGGTAATGACGAAAAGCAGGGGAGaaag                                        >  2:1525395/1‑138 (MQ=255)
                                                                                                     aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  2:2339898/140‑1 (MQ=255)
                                                                                                     aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGT‑CCGGA‑G‑AAACCCAACGGGGAAAACGAAAATCAATACCCTCGGGAATGACGAAAAGCAGGggggaaggggaa                                    >  2:212645/1‑140 (MQ=255)
                                                                                                     aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAAAAAAAAAATCCTTGT‑CCGGG‑G‑AACCCCAACGGGGAAAAAGAAAATCAAAACCCTCGGGAATGAAGAAAAGCAGGggggaaggggaa                                    >  2:1673024/1‑140 (MQ=255)
                                                                                                      cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAAAGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaaa                                   >  1:207070/1‑139 (MQ=255)
                                                                                                      cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTTT‑CCGGA‑G‑AACCCCCACGGGGAAAAAGAAAATCAAAACCGTCGGTAATGACGAAAAGCAGGGGGGAAGGGCaaa                                   >  2:464596/1‑139 (MQ=255)
                                                                                                        ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  2:1997123/140‑1 (MQ=255)
                                                                                                        agacagggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:346193/135‑1 (MQ=255)
                                                                                                          aTCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAACGGGCATAAAAAAAAACTCCTTTT‑CCGGA‑G‑AAACCCCACGGGGGAAAAGAAAATCAAAACCCTCGGGAATGACGAAAAGCAGGGGAGAAGGGCAAAgaga                               >  2:2457395/1‑140 (MQ=255)
                                                                                                           tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  2:2274316/140‑1 (MQ=255)
                                                                                                           tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGGATAACAAAAAACTCCCTGT‑CCGGA‑G‑GAACCCAACCGGGGAAACGAAATTTAAAAACCTCGGGCATGAGAAAAAACAGGGGAGAAAGGGAACGAGAc                              >  2:1266634/1‑140 (MQ=255)
                                                                                                             gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                            <  2:2289476/140‑1 (MQ=255)
                                                                                                                aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  1:1525395/140‑1 (MQ=255)
                                                                                                                              ggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc           <  1:2316177/140‑1 (MQ=255)
                                                                                                                              ggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc           <  1:119799/140‑1 (MQ=255)
                                                                                                                                cATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCAt         <  1:534882/140‑1 (MQ=255)
                                                                                                                                cATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACTCCTTGT‑CCGGA‑G‑AACCCCCACGGGGGAAAAGAAAATCAATACCCTCGGTAATGACGAAAGGGAGGGGGGAAGGGGAACGAGACTGCAAATGTACTGAATTTTAt         >  2:578337/1‑140 (MQ=255)
                                                                                                                                 aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg        <  2:403013/140‑1 (MQ=255)
                                                                                                                                  tGGCGGGGAAAAAAAAGTGGCATAAAAAACAACCCCTTGT‑CCGGA‑G‑AACCCCCACGGGGGAAAAGAAAATCAAAAACGTCGGGAAAGACGAAAAGCAGGGGAGAAGGGCAACGAGACTGCAAATGTACTGAAATTTATGt       >  2:2349829/1‑140 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:2541365/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:1960633/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:2905431/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:2928853/140‑1 (MQ=255)
                                                                                                                                     cGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  1:1305838/140‑1 (MQ=255)
                                                                                                                                     cGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  2:1372688/140‑1 (MQ=255)
                                                                                                                                     cGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  1:2175146/140‑1 (MQ=255)
                                                                                                                                       ggTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  1:503331/140‑1 (MQ=255)
                                                                                                                                       ggTAAAAAAAAGTGGCATAACAAAAAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  >  2:207253/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                            
AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568367‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑