BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,097,052	C→A	intergenic (+223/+513)	ycdU → / ← serX	uncharacterized protein YcdU/tRNA‑Ser

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,097,052	0	C	A	100.0%	209.7 / NA	76	intergenic (+223/+513)	ycdU/serX	uncharacterized protein YcdU/tRNA‑Ser
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (7/69); total (7/69)

Only 100 of 101 total aligned reads displayed.

ATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG  >  NC_000913/1096917‑1097188

aTGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTGACTCGCTtcgatccc                                                                                                                                        >  2:1375172/1‑138 (MQ=255)

aTGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTtcgatcgc                                                                                                                                        <  2:311894/140‑1 (MQ=255)

  gtgCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGccc                                                                                                                                      <  1:400560/140‑1 (MQ=255)

   tgCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTGACTCGCCTCGATCGcccc                                                                                                                                     >  2:2340784/1‑139 (MQ=255)

     cACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGGGGGGGGGGGTGACTCGCCTCGATCGCCCCGc                                                                                                                                   >  2:2714214/1‑140 (MQ=18)

       cGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCgg                                                                                                                                 <  1:2099414/140‑1 (MQ=255)

         aTTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGc                                                                                                                               <  2:823615/140‑1 (MQ=255)

         aTTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGc                                                                                                                               <  1:2792290/140‑1 (MQ=255)

         aTTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGc                                                                                                                               <  1:404494/140‑1 (MQ=255)

           ttCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAg                                                                                                                             <  1:1278403/140‑1 (MQ=255)

           ttCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAg                                                                                                                             <  2:1115555/140‑1 (MQ=255)

           ttCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAg                                                                                                                             <  1:1233539/140‑1 (MQ=255)

                  cGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTc                                                                                                                      <  1:2119874/140‑1 (MQ=255)

                  cGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAG‑GGGGGGGGTTGGCTCGCTTCGATCGCCCCGCGGGGAGcccccccc                                                                                                                     >  2:264822/1‑135 (MQ=17)

                   gCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCa                                                                                                                     <  1:283902/140‑1 (MQ=255)

                   gCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCa                                                                                                                     <  1:2714214/140‑1 (MQ=255)

                    cccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGGTGACTCCCCTCCCTCCCCCCGCGGGGCGccccccccc                                                                                                                    >  2:2322042/1‑134 (MQ=17)

                    cccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCAc                                                                                                                    <  2:1037178/140‑1 (MQ=255)

                     ccTAACAGACGTGGGCGGGGGCA‑CCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTg                                                                                                                  <  2:1672634/140‑1 (MQ=255)

                      ctgaCAGGCGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGGGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTg                                                                                                                  <  2:699925/137‑1 (MQ=255)

                      cTAACAGACGTGGGCGTGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAAGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTg                                                                                                                  <  2:2390073/140‑1 (MQ=255)

                      cTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTg                                                                                                                  <  1:2243076/140‑1 (MQ=255)

                      cTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTg                                                                                                                  <  1:247465/140‑1 (MQ=255)

                        aaCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTGACTCGCCTCGATCCCCCTTCGGGCAGCCCGCCCACcgcg                                                                                                                >  1:377361/1‑140 (MQ=14)

                          cAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGtt                                                                                                              <  1:198615/140‑1 (MQ=255)

                           aGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGTGGGCAGCCCGCTCACTGCGTTc                                                                                                             <  1:52843/140‑1 (MQ=255)

                           aGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTc                                                                                                             <  1:1314780/140‑1 (MQ=255)

                           aGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTc                                                                                                             <  2:389024/140‑1 (MQ=255)

                              cGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg                                                                                                          <  2:2527950/140‑1 (MQ=255)

                               gTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTGGACCCCTTCCGTCGCCCCGCGGGCAGGCCCCCCCCTTCCTTCACgg                                                                                                         >  1:1681493/1‑140 (MQ=14)

                                tGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                                                                                                        <  1:234581/140‑1 (MQ=255)

                                tGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                                                                                                        <  2:2800475/140‑1 (MQ=255)

                                tGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                                                                                                        <  1:1427425/140‑1 (MQ=255)

                                tGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGA‑GGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTc                                                                                                       <  1:264822/140‑1 (MQ=255)

                                    cGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGGGGGGGGGGTTGGCTCTCTTCGATCGCCCCGCGGGGGGCCCCCCCCCTGCGGTCCCCGTCTGt                                                                                                    >  2:2919421/1‑140 (MQ=11)

                                       gggCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCa                                                                                                 <  2:602442/140‑1 (MQ=18)

                                         gCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAc                                                                                               <  2:1913325/140‑1 (MQ=17)

                                                                aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGAccc                                                                      <  1:2919421/140‑1 (MQ=17)

                                                                aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGCCG‑CCAGTTGT‑CGAccc                                                                      <  2:1956472/140‑1 (MQ=17)

                                                                  aaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTGACTCGCCTCCCCCGCCCCGCGGGGAGCCCCCCCCCCGCGTTTCCCGGCTTTCCCACCCGCTGTCG‑CCCGCTTT‑CGAccccc                                                                    >  2:1297701/1‑140 (MQ=2)

                                                                    aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCgg                                                                  <  2:618120/140‑1 (MQ=17)

                                                                     aaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGt                                                                 <  2:2915718/140‑1 (MQ=18)

                                                                      aaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTGACTCGCTTCGATCGCCCCGCGGGGGGCCCCCCCCCTGCGTTCCCCGTCTGTCCAACCGGCTGTCG‑GCCGTTGT‑CGAccccccggc                                                                >  2:2590037/1‑136 (MQ=11)

                                                                       aGCCCGTACTTTCGTACGAGCTGTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCg                                                               <  1:2185654/140‑1 (MQ=17)

                                                                        gCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCgg                                                              <  1:2629250/140‑1 (MQ=18)

                                                                        gCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCgg                                                              <  1:1375172/140‑1 (MQ=18)

                                                                             tACTTTCGTACGAGCTCTTCTTTAAATATTGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCtt                                                         <  2:2812487/140‑1 (MQ=17)

                                                                               cTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCTGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTtct                                                       <  1:1884130/140‑1 (MQ=17)

                                                                               cTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTtct                                                       <  1:1809668/140‑1 (MQ=17)

                                                                               cTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTtct                                                       <  2:1989597/140‑1 (MQ=17)

                                                                               cTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTtct                                                       <  1:1446453/140‑1 (MQ=17)

                                                                               cTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTtct                                                       <  1:500980/140‑1 (MQ=17)

                                                                                 ttCGTACGAGCTCTTCTTTAAATATGTCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGTCCCCCGGTCGGGGCTTCTCa                                                     <  1:2347505/140‑1 (MQ=12)

                                                                                 ttCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCa                                                     <  1:2956310/140‑1 (MQ=17)

                                                                                 ttCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCa                                                     <  1:329501/140‑1 (MQ=17)

                                                                                 ttCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCa                                                     <  2:429425/140‑1 (MQ=17)

                                                                                 ttCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCa                                                     <  2:2800797/140‑1 (MQ=17)

                                                                                       cGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGTTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATccccc                                               <  1:769241/140‑1 (MQ=17)

                                                                                        gAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATcccccc                                              <  2:710888/140‑1 (MQ=17)

                                                                                        gAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATcccccc                                              <  2:874560/140‑1 (MQ=17)

                                                                                        gAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATcccccc                                              <  1:2100986/140‑1 (MQ=17)

                                                                                         aGCTCTTCTTTAAATATGGCGGTGAGGGGGGGGTTGACTCGCTTCGCCCCCCCCCCCGGGCGCCCCCCCCCCGCCTTCACCGGCTGTCCCACCGGCTGGCGCCCCGTGTT‑CGACCCCCGG‑CGGGGGGTCTCCTccccccc                                             >  2:2308819/1‑139 (MQ=2)

                                                                                         aGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCg                                             <  2:1148649/140‑1 (MQ=17)

                                                                                         aGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCg                                             <  2:620776/140‑1 (MQ=17)

                                                                                         aGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCg                                             <  2:2150873/140‑1 (MQ=17)

                                                                                         aGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCg                                             <  1:2139556/140‑1 (MQ=17)

                                                                                         aGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCg                                             <  1:2289776/140‑1 (MQ=17)

                                                                                           ctctTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt                                           <  1:1463342/140‑1 (MQ=17)

                                                                                           ctctTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt                                           <  1:1970010/140‑1 (MQ=17)

                                                                                           ctctTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt                                           <  1:985287/140‑1 (MQ=17)

                                                                                           ctctTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt                                           <  1:849432/140‑1 (MQ=17)

                                                                                           ctctTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt                                           <  1:2547517/140‑1 (MQ=17)

                                                                                           ctctTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt                                           <  1:2696419/140‑1 (MQ=17)

                                                                                             cttcttTAAATATGGCGGTGAGGGGGGGGTTGACTCGCCTCGGTCGCCCCGCGGGCGGCCCCCCCCCCCCGTTTCCCGGCTGTCCAACTGGCTGTCG‑CCCGTTGTCCAACCCCCGGCCGGGCCTT‑TCCTcccccccgggg                                         >  2:1258933/1‑135 (MQ=0)

                                                                                             cttcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt                                         <  1:1767539/140‑1 (MQ=17)

                                                                                                cttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCATTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGtgtgtg                                      <  1:1309603/140‑1 (MQ=17)

                                                                                                cttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGtgtgtg                                      <  1:1339100/140‑1 (MQ=17)

                                                                                                          ggCGGTGGGGGGGGGGGTTACTCGCTTCGATCGCCCCGCGGGCGGCCCGCCCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCCAGTGT‑CGACCCCCCGCCGGGGGTTCTCATCCCCCCCGCGTGGGGGAAACACGa                            >  2:2067669/1‑140 (MQ=2)

                                                                                                          ggCGGTGAGGGGGGGGTTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCCCTGCGTTTACGGTCTGTTCCACTGGCTGTCG‑CCAGGTGT‑CGACCCCCCGGCGGGGGTTCTCATCCCCCCCGGGTGTGCAATACACGa                            >  2:1636686/1‑140 (MQ=11)

                                                                                                                 aGGGGGGGGTTGACTCGCCTCCATCGCCCCGCGGGCCGCCCCCCCACTGCGGTCACCGGCTTTTCCACTGGCTGTCG‑CCAGTTTT‑CGACCCCCCGGCGGGGGTTCTCATCCCCCCCGGGTGTGCAATACACGaaaaaaaa                     >  2:788573/1‑140 (MQ=255)

                                                                                                                   ggggggATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGc                   >  2:813445/1‑140 (MQ=21)

                                                                                                                      gggATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCg                <  2:2628668/140‑1 (MQ=25)

                                                                                                                      gggATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACCGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGCCGGGGCTTCTACCCCCCCCGGGGTGTGCAAAACACAAAAAAAAAGcccc                >  2:1039459/1‑139 (MQ=11)

                                                                                                                       ggATTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGt               <  1:737180/140‑1 (MQ=25)

                                                                                                                         aTTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTAc             <  1:2681034/140‑1 (MQ=25)

                                                                                                                         aTTGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTAc             <  1:1435104/140‑1 (MQ=25)

                                                                                                                           tGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACtt           <  1:813445/140‑1 (MQ=21)

                                                                                                                           tGACTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACtt           <  2:1741935/140‑1 (MQ=21)

                                                                                                                             aCTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgt                                         >  2:2373003/1‑108 (MQ=17)

                                                                                                                             aCTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGgt                                           >  2:2986978/1‑106 (MQ=17)

                                                                                                                             aCTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACt            <  2:2354190/137‑1 (MQ=21)

                                                                                                                             aCTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACt            >  1:2354190/1‑137 (MQ=21)

                                                                                                                             aCTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTc         >  1:952481/1‑140 (MQ=21)

                                                                                                                             aCTCGCTTCGATCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTc         >  2:2428854/1‑140 (MQ=21)

                                                                                                                               tcgcttcgatCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGt       >  2:611143/1‑140 (MQ=21)

                                                                                                                                  cttcgatCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACg    >  1:1627291/1‑140 (MQ=21)

                                                                                                                                  cttcgatCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACg    >  1:2326954/1‑140 (MQ=21)

                                                                                                                                  cttcgatCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACg    >  2:576681/1‑140 (MQ=21)

                                                                                                                                  cttcgatCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACg    >  2:2130674/1‑140 (MQ=21)

                                                                                                                                    tcgatcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAg  <  1:2322042/140‑1 (MQ=21)

ATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCG‑CCAGTTGT‑CGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAG  >  NC_000913/1096917‑1097188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`