BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,197,425	G→T	S36R (AGC→AGA)	ymfD ←	e14 prophage; putative SAM‑dependent methyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,197,425	0	G	T	100.0%	679.8 / NA	193	S36R (AGC→AGA)	ymfD	e14 prophage; putative SAM‑dependent methyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (77/116); total (77/116)

Only 100 of 195 total aligned reads displayed.

ATTCCTCTAATAATTTGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTG  >  NC_000913/1197288‑1197554

     tctAATAATTTGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTaa                                                                                                                            >  2:237023/1‑140 (MQ=255)

     tctAATAATTTGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTaa                                                                                                                            >  1:64253/1‑140 (MQ=255)

         ataatTTGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAAtata                                                                                                                        <  2:355739/140‑1 (MQ=255)

             tttGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCg                                                                                                                    <  2:1345455/140‑1 (MQ=255)

              ttGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGc                                                                                                                   >  1:1242243/1‑140 (MQ=255)

               tGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCa                                                                                                                  <  1:2911336/140‑1 (MQ=255)

               tGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCa                                                                                                                  >  2:582572/1‑140 (MQ=255)

               tGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTCCCTCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCa                                                                                                                  <  1:3018716/140‑1 (MQ=255)

                 ctctctTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCaaa                                                                                                                <  1:2607881/140‑1 (MQ=255)

                 ctctctTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCaaa                                                                                                                <  1:2638951/140‑1 (MQ=255)

                 ctctctTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCaaa                                                                                                                <  1:1039522/140‑1 (MQ=255)

                   ctctTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCg                                                                                                                    <  2:616610/134‑1 (MQ=255)

                   ctctTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCg                                                                                                                    >  1:616610/1‑134 (MQ=255)

                    tctTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGat                                                                                                             <  1:2469711/140‑1 (MQ=255)

                    tctTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGat                                                                                                             <  2:1294962/140‑1 (MQ=255)

                      tttCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATAc                                                                                                                       >  1:1476532/1‑128 (MQ=255)

                      tttCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGatat                                                                                                           <  1:2226976/140‑1 (MQ=255)

                      tttCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGatat                                                                                                           >  1:2718637/1‑140 (MQ=255)

                           aGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCa                                                                                                                  >  1:228236/1‑128 (MQ=255)

                           aGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTaga                                                                                                      >  2:878805/1‑140 (MQ=255)

                            gTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTagag                                                                                                     <  1:133355/140‑1 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 >  1:2801790/1‑140 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 >  1:2378976/1‑140 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 <  1:582572/140‑1 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 <  2:97287/140‑1 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 >  2:1664392/1‑140 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 <  1:207074/140‑1 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 >  2:1940765/1‑140 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 >  2:2041949/1‑140 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 >  1:1867460/1‑140 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 >  1:2110421/1‑140 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 >  1:1672375/1‑140 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 <  2:2736361/140‑1 (MQ=255)

                                ccTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCa                                                                                                 >  2:810099/1‑140 (MQ=255)

                                ccTTTTCGAGGCTAGAAAAGCAACTTCATCAAATTTCCTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAGATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCCCAAAGATGTCTAGAGGGCa                                                                                                 >  2:1140470/1‑140 (MQ=255)

                                          tCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAgg                                                                                       >  2:174782/1‑140 (MQ=255)

                                          tCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAgg                                                                                       >  1:169840/1‑140 (MQ=255)

                                          tCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAgg                                                                                       >  1:121035/1‑140 (MQ=255)

                                            tAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGtt                                                                                     >  1:1788153/1‑140 (MQ=255)

                                              gAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGtttt                                                                                   <  2:81289/140‑1 (MQ=255)

                                              agaaaGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGtttt                                                                                   <  1:84184/138‑1 (MQ=255)

                                              agaaaGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGtttt                                                                                   <  1:322352/138‑1 (MQ=255)

                                               aaaaGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTtg                                                                                  <  2:2323994/140‑1 (MQ=255)

                                                aaaGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTtgc                                                                                 <  1:1889633/140‑1 (MQ=255)

                                                    tAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGATGTTTTGCTGCa                                                                             >  1:2997949/1‑140 (MQ=255)

                                                    tAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCa                                                                             <  1:1514695/140‑1 (MQ=255)

                                                    tAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCa                                                                             <  1:174782/140‑1 (MQ=255)

                                                    tAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCa                                                                             >  2:2443143/1‑140 (MQ=255)

                                                    tAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCa                                                                             >  1:2088374/1‑140 (MQ=255)

                                                       cTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCa                                                                             <  1:154678/137‑1 (MQ=255)

                                                       cTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCa                                                                             >  2:154678/1‑137 (MQ=255)

                                                         tcatcaAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATtctc                                                                        <  2:1064851/140‑1 (MQ=255)

                                                         tcatcaAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATtctc                                                                        >  1:234238/1‑140 (MQ=255)

                                                             caAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAg                                                                    >  2:2134733/1‑140 (MQ=255)

                                                             caAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAg                                                                    <  1:1621720/140‑1 (MQ=255)

                                                               aaTTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCg                                                                  <  1:1085195/140‑1 (MQ=255)

                                                               aaTTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCg                                                                  <  1:302456/140‑1 (MQ=255)

                                                               aaTTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCg                                                                  <  1:2041949/140‑1 (MQ=255)

                                                               aaTTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCg                                                                  <  2:2958751/140‑1 (MQ=255)

                                                                 tttACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGaa                                                                >  2:1397438/1‑140 (MQ=255)

                                                                         ttAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACt                                                        <  2:234238/140‑1 (MQ=255)

                                                                         ttAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACt                                                        <  1:738510/140‑1 (MQ=255)

                                                                          tAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTc                                                       >  1:956735/1‑140 (MQ=255)

                                                                           aaTTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTcc                                                      <  2:394166/140‑1 (MQ=255)

                                                                             ttCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGt                                                    <  2:708553/140‑1 (MQ=255)

                                                                                atcaGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCa                                                 <  2:2556136/140‑1 (MQ=255)

                                                                                atcaGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCa                                                 <  2:266780/140‑1 (MQ=255)

                                                                                atcaGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCa                                                 >  2:794974/1‑140 (MQ=255)

                                                                                atcaGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCa                                                 <  2:2178720/140‑1 (MQ=255)

                                                                                atcaGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCa                                                 <  2:1874373/140‑1 (MQ=255)

                                                                                atcaGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCa                                                 <  2:169840/140‑1 (MQ=255)

                                                                                     aaTATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCAtatta                                            <  2:1102213/140‑1 (MQ=255)

                                                                                       tatCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACt                                                        >  1:2986328/1‑126 (MQ=255)

                                                                                       tatCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACt                                                        <  2:2986328/126‑1 (MQ=255)

                                                                                       tatCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATtata                                          >  2:93298/1‑140 (MQ=255)

                                                                                       tatCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATtata                                          >  1:479556/1‑140 (MQ=255)

                                                                                          cTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCA‑TTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCAtatta                                            <  2:2232955/134‑1 (MQ=255)

                                                                                           tAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTc                                      <  2:2088374/140‑1 (MQ=255)

                                                                                           tAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTc                                      <  1:1397438/140‑1 (MQ=255)

                                                                                           tAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTc                                      <  1:2597872/140‑1 (MQ=255)

                                                                                           tAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTc                                      <  2:479556/140‑1 (MQ=255)

                                                                                               ttttCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAg                                  >  2:1861894/1‑140 (MQ=255)

                                                                                                 ttCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCAtatta                                            <  1:429949/128‑1 (MQ=255)

                                                                                                 ttCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCa                                >  1:1591120/1‑140 (MQ=255)

                                                                                                  tCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCaa                               >  2:2487414/1‑140 (MQ=255)

                                                                                                  tCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCG‑ATATTAACTCCGTGCATATTATAGTTCAAAGCAAg                              >  2:2762095/1‑140 (MQ=255)

                                                                                                   ccGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAg                              <  2:1242243/140‑1 (MQ=255)

                                                                                                        gCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCa                                     >  2:1158294/1‑128 (MQ=255)

                                                                                                        gCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCa                                     <  1:1158294/128‑1 (MQ=255)

                                                                                                        gCCAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCa                         <  1:1940765/140‑1 (MQ=255)

                                                                                                         ccAAAATCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCAt                        <  1:237023/140‑1 (MQ=255)

                                                                                                              aTCAAGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAAt                   <  2:2379769/140‑1 (MQ=255)

                                                                                                                  aGGGCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAAt               <  2:1555951/140‑1 (MQ=255)

                                                                                                                   gggCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATg              >  2:3069758/1‑140 (MQ=255)

                                                                                                                   gggCGTGGCCATTTTTCTCAATTATTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATg              >  2:2924111/1‑140 (MQ=255)

                                                                                                                     gCGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGtt            <  1:2081353/140‑1 (MQ=255)

                                                                                                                      cGTGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTa           >  2:649115/1‑140 (MQ=255)

                                                                                                                        tGGCCATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTAtt         >  1:810705/1‑140 (MQ=255)

                                                                                                                            cATTTTTCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTa     <  1:2438872/140‑1 (MQ=255)

                                                                                                                               ttttCTCAATTCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTg  >  1:1133669/1‑140 (MQ=255)

ATTCCTCTAATAATTTGCTCTCTTTCAAGTTGCCTTTTCGAGTCTAGAAAAGTAACTTCATCAAATTTACTGATTAATTCATCAGAATATCTAAGTTTTCCGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGCTTCTAATATACTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTG  >  NC_000913/1197288‑1197554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`