Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,455,877 Δ1 bp intergenic (‑231/+450) yfcV ← / ← sixA putative fimbrial protein YfcV/phosphohistidine phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,455,8750A.99.1% 457.3 / ‑2.1 107intergenic (‑229/+452)yfcV/sixAputative fimbrial protein YfcV/phosphohistidine phosphatase
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base . (62/44);  total (62/45)
Fisher's exact test for biased strand distribution p-value = 4.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.75e-01

Only 100 of 125 total aligned reads displayed.

TACGGCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGATTGGCATTAACCCGCTTTTG  >  NC_000913/2455736‑2456011
                                                                                                                                           |                                                                                                                                        
tACGGCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGa                                                                                                                                          >  1:366484/1‑140 (MQ=255)
  cGGCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaag                                                                                                                                        >  2:669729/1‑139 (MQ=255)
   ggCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaaga                                                                                                                                       <  2:1416994/140‑3 (MQ=255)
   ggCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaaga                                                                                                                                       <  1:978241/140‑3 (MQ=255)
   ggCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaaga                                                                                                                                       <  1:713995/140‑3 (MQ=255)
   ggCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaaga                                                                                                                                       >  1:1398636/1‑138 (MQ=255)
   ggCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaaga                                                                                                                                       <  1:1817549/140‑3 (MQ=255)
    gCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaagat                                                                                                                                      <  1:333536/140‑4 (MQ=255)
    gCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGa                                                                                                                                          <  2:2043155/136‑1 (MQ=255)
     cATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaagatt                                                                                                                                     <  1:799718/140‑5 (MQ=255)
     cATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaagatt                                                                                                                                     <  2:1986320/140‑5 (MQ=255)
     cATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaagatt                                                                                                                                     >  1:1986320/1‑136 (MQ=255)
     cATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGaagatt                                                                                                                                     >  1:193796/1‑136 (MQ=255)
      aTGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTa                                                                                                                                   <  2:1692076/140‑1 (MQ=255)
        gCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATc                                                                                                                                 >  1:284255/1‑140 (MQ=255)
        gCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGGAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATc                                                                                                                                 <  1:1009505/140‑1 (MQ=255)
              cAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAgg                                                                                                                           <  1:1106742/140‑1 (MQ=255)
                aaaaaaCAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGAt                                                                                                                         <  1:76726/140‑1 (MQ=255)
                    aaCAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGAtcttc                                                                                                                     <  2:864387/140‑1 (MQ=255)
                      cAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTa                                                                                                                   >  2:1501382/1‑140 (MQ=255)
                      cAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTa                                                                                                                   >  2:607490/1‑140 (MQ=255)
                        ggTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTaaa                                                                                                                 >  2:208138/1‑140 (MQ=255)
                              aaaaaaTGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAaca                                                                                                           <  1:590401/140‑1 (MQ=255)
                              aaaaaaTGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAaca                                                                                                           <  2:284255/140‑1 (MQ=255)
                               aaaaaTGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAacac                                                                                                          <  1:1780866/140‑1 (MQ=255)
                                 aaaTGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGa                                                                                                        <  1:435074/140‑1 (MQ=255)
                                 aaaTGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGa                                                                                                        <  1:1509163/140‑1 (MQ=255)
                                    tGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACAAAat                                                                                                     <  1:601227/140‑1 (MQ=255)
                                     gTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTaaaaa                                                                                                               >  1:839492/1‑129 (MQ=255)
                                     gTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTaaaaa                                                                                                               <  2:839492/129‑1 (MQ=255)
                                        ttCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAatatat                                                                                                 >  1:754749/1‑140 (MQ=255)
                                            ttGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATAttt                                                                                             >  2:174783/1‑140 (MQ=255)
                                              ggTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGa                                                                                                        >  2:768532/1‑127 (MQ=255)
                                              ggTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGa                                                                                                        <  1:768532/127‑1 (MQ=255)
                                                tgtgGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGaa                                                                                         >  1:1309249/1‑140 (MQ=255)
                                                     ggTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAAc                                                                                    >  2:1235660/1‑140 (MQ=255)
                                                       tCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAg                                                                                  >  1:2001467/1‑140 (MQ=255)
                                                        cGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAgg                                                                                 <  1:208138/140‑1 (MQ=255)
                                                         gAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGa                                                                                <  2:1344015/140‑1 (MQ=255)
                                                          aaTAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGaa                                                                               >  2:1348656/1‑140 (MQ=255)
                                                          aaTAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGaa                                                                               >  1:1515733/1‑140 (MQ=255)
                                                          aaTAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGaa                                                                               >  1:270320/1‑140 (MQ=255)
                                                           aTAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAg                                                                              <  2:1398636/140‑1 (MQ=255)
                                                           aTAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAg                                                                              <  1:28400/140‑1 (MQ=255)
                                                              gTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCat                                                                           <  1:1501382/140‑1 (MQ=255)
                                                              gTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCat                                                                           <  1:163429/140‑1 (MQ=255)
                                                               tGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCata                                                                          <  2:1444642/140‑1 (MQ=255)
                                                               tGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCata                                                                          >  2:1305307/1‑140 (MQ=255)
                                                                 aTGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATc                                                                        <  2:2010812/140‑1 (MQ=255)
                                                                  tGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATca                                                                       <  1:353965/140‑1 (MQ=255)
                                                                   gTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATcaa                                                                      <  2:1419379/140‑1 (MQ=255)
                                                                   gTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATcaa                                                                      <  1:66608/140‑1 (MQ=255)
                                                                   gTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATcaa                                                                      <  2:1309249/140‑1 (MQ=255)
                                                                    ttttCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATcaa                                                                      <  2:1735146/140‑1 (MQ=255)
                                                                     tttCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATcaaca                                                                    >  1:1985123/1‑140 (MQ=255)
                                                                      ttCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATcaacaa                                                                   <  1:1664334/140‑1 (MQ=255)
                                                                        cACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACaatg                                                                 <  1:1125826/140‑1 (MQ=255)
                                                                         aCTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACaatga                                                                >  2:1239711/1‑140 (MQ=255)
                                                                               cTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCa                                                          <  2:2021202/140‑1 (MQ=255)
                                                                                tGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCaa                                                         >  1:1852833/1‑140 (MQ=255)
                                                                                  aTTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATa                                                       >  2:1634340/1‑140 (MQ=255)
                                                                                   ttCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAg                                                      >  1:227081/1‑140 (MQ=255)
                                                                                   ttCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAg                                                      >  1:517040/1‑140 (MQ=255)
                                                                                     cAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCt                                                    >  1:780646/1‑140 (MQ=255)
                                                                                       atttaatttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTa                                                  >  2:865946/1‑140 (MQ=255)
                                                                                       atttaatttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTa                                                  >  2:633833/1‑140 (MQ=255)
                                                                                       atttaatttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTa                                                  >  1:1426570/1‑140 (MQ=255)
                                                                                       atttaatttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTa                                                  >  1:1257693/1‑140 (MQ=255)
                                                                                       atttaatttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTa                                                  >  1:818603/1‑140 (MQ=255)
                                                                                       atttaatttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTa                                                  >  1:1201902/1‑140 (MQ=255)
                                                                                       atttaatttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTa                                                  >  2:92570/1‑140 (MQ=255)
                                                                                       atttaatttTACTAATGAGCAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAATCATATCAACAATGAATGCCAATAGCTTa                                                  >  1:1679252/1‑140 (MQ=255)
                                                                                        tttaatttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTaa                                                 >  1:110302/1‑140 (MQ=255)
                                                                                        tttaatttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTaa                                                 >  1:539002/1‑140 (MQ=255)
                                                                                            atttTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTaaaaaa                                             >  1:1578883/1‑140 (MQ=255)
                                                                                             ttttACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAaaac                                            <  2:1985123/140‑1 (MQ=255)
                                                                                                tACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAaaacaaa                                         >  2:46379/1‑140 (MQ=255)
                                                                                                     aTGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATg                                    <  2:1863435/140‑1 (MQ=255)
                                                                                                       gAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAaaacaaa                                         >  1:118250/1‑133 (MQ=255)
                                                                                                       gAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAaaacaaa                                         <  2:118250/133‑1 (MQ=255)
                                                                                                        aGTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAAc                                 >  1:331068/1‑140 (MQ=255)
                                                                                                         gTAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACa                                <  1:639686/140‑1 (MQ=255)
                                                                                                          tAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACat                               >  2:1602850/1‑140 (MQ=255)
                                                                                                          tAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACat                               >  1:1212291/1‑140 (MQ=255)
                                                                                                          tAAATGTAGATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACat                               >  1:751345/1‑140 (MQ=255)
                                                                                                                  gATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCg                       >  1:354185/1‑140 (MQ=255)
                                                                                                                  gATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCg                       >  2:70510/1‑140 (MQ=255)
                                                                                                                  gATTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCg                       >  2:759677/1‑140 (MQ=255)
                                                                                                                   aTTTAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGa                      >  2:600262/1‑140 (MQ=255)
                                                                                                                    tttAATTAATATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGAt                     <  1:970246/140‑1 (MQ=255)
                                                                                                                    ttaaattaatATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGAt                     <  2:1236792/137‑1 (MQ=255)
                                                                                                                        attaatATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACatat                             >  2:206959/1‑128 (MQ=255)
                                                                                                                        attaatATATTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACatat                             <  1:206959/128‑1 (MQ=255)
                                                                                                                               tatTGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGATTGGCATTAAcc          <  1:1239711/140‑1 (MQ=255)
                                                                                                                                  tGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAATAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGATTGGCATTAACCCGc       >  1:207187/1‑140 (MQ=255)
                                                                                                                                  tGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGATTGGCATTAACCCGc       >  1:738828/1‑140 (MQ=255)
                                                                                                                                  tGATAGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGATTGGCATTAACCCGc       >  1:1762322/1‑140 (MQ=255)
                                                                                                                                      aGGGGAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGATTGGCATTAACCCGCtttt   >  1:1816552/1‑140 (MQ=255)
                                                                                                                                        ggggAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGATTGGCATTAACCCGCTTTTg  >  1:505404/1‑140 (MQ=255)
                                                                                                                                        ggggAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGATTGGCATTAACCCGCTTTTg  >  2:154565/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                        
TACGGCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTGGGGTCGAATAGTGATGTTTTCACTCCCCTGATTCAATTTAATTTTACTAATGAGTAAATGTAGATTTAATTAATATATTGATAGGGGAAAGATTATCTTAAGGATCTTCTAAAAAAACACGAAATATATATTTAGAAAAAACAGGAAGCATATCAACAATGAATGCCAATAGCTTAAAAAACAAACAATGAACATATAATGCGATTGGCATTAACCCGCTTTTG  >  NC_000913/2455736‑2456011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: