Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG35.9% 287.6 / 18.0 144T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (28/63);  new base G (51/0);  total (81/63)
Fisher's exact test for biased strand distribution p-value = 1.91e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 152 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTA  >  NC_000913/4568369‑4568637
                                                                                                                                       |                                                                                                                                         
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                                                                                                                                       >  1:1726236/1‑140 (MQ=255)
     aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                  <  2:850754/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTg                                                                                                                                >  1:1146987/1‑140 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTg                                                                                                                                >  1:1577961/1‑140 (MQ=255)
           aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                                            >  1:426681/1‑140 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                           <  1:795915/140‑1 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATa                                                                                                                           >  1:1509022/1‑140 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATa                                                                                                                           >  2:767655/1‑140 (MQ=255)
               cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa‑ca                                                                                                                       <  2:885443/140‑1 (MQ=255)
                ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTGAAAAAAAGACGCATaa‑gaa                                                                                                                      >  2:1547368/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                >  2:1804943/1‑130 (MQ=255)
                  cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa‑caaac                                                                                                                    <  2:426681/140‑1 (MQ=255)
                  cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa‑caaac                                                                                                                    <  1:1619535/140‑1 (MQ=255)
                  cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATaa‑caaaa                                                                                                                    >  2:1488363/1‑139 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTcc                                                                                                              <  1:551254/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGt                                                                                                          >  1:639481/1‑140 (MQ=255)
                             cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑c                                                                                                        <  2:119281/140‑1 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAGTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑g                                                                                                     <  2:1193493/140‑1 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑g                                                                                                     <  1:1511489/140‑1 (MQ=255)
                                aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑gg                                                                                                    <  1:1258680/140‑1 (MQ=255)
                                     aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAA‑AAAAAAACTCCTTGT‑CC‑GG‑AGAAc                                                                                              >  1:1125748/1‑140 (MQ=255)
                                         aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCa                                                                                          >  1:447157/1‑140 (MQ=255)
                                         aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAA‑AAAAAAAACCCCTTT‑CC‑GG‑AGAAacccc                                                                                          >  2:326807/1‑139 (MQ=255)
                                          tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAA‑AAAACAACTCCTTGT‑CC‑GG‑AGAACCCCaa                                                                                         >  1:47144/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACCTGGCATAA‑AAAAAAACTCCCTGT‑CC‑GG‑AGAACCCCAACg                                                                                       >  2:1783712/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAA‑CAAAAAACTCCTTGT‑CC‑GG‑AGAACCCCAACg                                                                                       >  1:1751874/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTGAAAAAACATGGCATAA‑CAAAAAACACCCTTT‑TC‑TG‑AGAAACCCAAcaagg                                                                                    >  2:534082/1‑136 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACgggg                                                                                    >  1:1541608/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACgggg                                                                                    >  1:861862/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCGTAA‑CAAAAAACTCCTTCT‑GC‑GG‑AGAAGCCCAACgggg                                                                                    >  1:103670/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAA‑CAAACAACTCCCTTT‑CC‑CG‑AGAACCCCAACgggg                                                                                    >  1:1445264/1‑140 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGa                                                                                   <  1:1614097/140‑1 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGa                                                                                   <  1:1794437/140‑1 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAA‑CAAACAACTCCTTTT‑CC‑GG‑AGAACCCCAACGGGGgaaa                                                                                >  1:944280/1‑140 (MQ=255)
                                                    cTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAA‑AAAAAAAAACCTTTT‑TC‑GG‑AGAACCCCCACGGGGgaaaa                                                                               >  2:1006200/1‑139 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACg                                                                              <  1:1322556/140‑1 (MQ=255)
                                                      ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCCTAA‑CAAACAACCCCCTGT‑TC‑CG‑CGAAGCCCCACGGGGgaaaaaa                                                                             >  2:1467895/1‑137 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGaa                                                                            >  1:337046/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCGTAA‑CAAAAAACCCCTTGT‑CC‑GG‑AGAAACCCAACGGGGGAAAAGaa                                                                            >  1:912252/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAA‑CAAAAAAATCCTTGT‑CC‑GG‑AGAACCCCCACGGGGGAAAAGaa                                                                            >  2:1377552/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAA‑AAAAAAACCCCTTTT‑CC‑GG‑AGAACCCCAACGGGGGAAAAGaa                                                                            >  2:1841179/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGCATAA‑CAAACAAATCCTCGT‑CC‑GG‑AGAAACCCAACGGGGGAAACGaa                                                                            >  2:158592/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACCGGCATAA‑AAAAAAACACCTTGT‑TC‑GGCGGAACCCCACAGGGGaaaagaa                                                                             >  2:1598762/1‑137 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCATAA‑CAAACAAAACCTTGTCCC‑GG‑AGAACCCCAACGGGGGAAACGa                                                                             >  2:1118125/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGCGGGAAAA‑AAAAAAAAACCTTGT‑GC‑CG‑GGAACCCCAACGGGGGAAAAGaaa                                                                           >  2:1296491/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAA‑CAAAAAACCCCCTTT‑CC‑CG‑AGAACCCCCACGGGGAAAACGaaa                                                                           >  2:245602/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCGAAA‑CAAAAAAAACCCTTT‑TC‑CG‑AGAACACCAACGGGGaaaaacaaa                                                                           >  2:320539/1‑135 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAA‑CAAAAAACTCCTTGT‑CC‑GG‑AGAACCCCCACGGGGGAAAAGaaa                                                                           >  2:125329/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAA‑CAAACAACTCCCTGT‑CC‑GG‑AGAACCCCCACGGGGGAAACGaaa                                                                           >  1:323498/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAA‑AAAAAAAATCCTTTT‑CC‑GG‑AGAACCCCCACGGGGGAAAAGaaa                                                                           >  2:657582/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAA‑CAAAAAACACCTTGT‑CC‑CG‑GGAAACCCAACGGGGAAAAAGaaa                                                                           >  2:1645681/1‑140 (MQ=255)
                                                            gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAA‑CAAAAAACTCCTTGT‑CC‑GG‑AGAAACCCAACGGGGGAAACGAAAATCa                                                                       >  1:627953/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAAATCaa                                                                      >  1:1240237/1‑140 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAAt                                                                     <  1:1528177/140‑1 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAAt                                                                     <  1:446756/140‑1 (MQ=255)
                                                                cGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATAc                                                                   <  1:326807/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATAcc                                                                  <  2:1880654/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGCGAAAAAAACCAGGCCAAA‑AAAACAACTCCTTTT‑CC‑CG‑GGAACCCCCAAAGGGGAAACCAAAATAAATAcc                                                                  >  2:1288142/1‑140 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCg                                                                 <  2:448916/140‑1 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑GGAACCCCAACGGGGAAAACGAAAATCAAAAccc                                                                 >  2:1320803/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAA‑AAAAAAACCCCTTGT‑CC‑GG‑GGAACCCCAACCGGGGAAACGAAAATCAAAAccc                                                                 >  2:1621731/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAA‑CAAAAAACTCCTTGT‑CC‑GG‑GGAACCCCCACGGGGGAAAAGAAAATCAATAccc                                                                 >  2:808985/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAA‑AAAAAAAATCCTTGT‑CC‑GG‑AGAAACCCCACGGGGAAAAAGAAATTCAATAccc                                                                 >  2:29410/1‑139 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAA‑‑AAACAACTCCCTGT‑CC‑GG‑AGAACCCCCACGGGGGAAACGAAAATTAAAAACGTCGGTAAt                                                         >  2:1773525/1‑140 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAA‑AAAAAAAATCCTTGT‑CC‑GG‑AGAAACCCCAAGGGGAAAAAGAAAATCAAAAACCTCGGGaa                                                          >  2:348293/1‑140 (MQ=255)
                                                                              cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                     <  1:1991026/140‑1 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGGATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAGCTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                   <  2:2051583/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                  <  1:1841179/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAA‑AAAAAAAAACCTTGT‑CC‑CG‑GGGACCCCAACGGGGGAAAAAAAATTAAAAAACGTCGGTAATGACGaaa                                                  >  2:2057644/1‑140 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCAGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                  <  2:645197/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                >  1:14696/1‑140 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                <  1:498968/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                <  1:657582/140‑1 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                           <  2:1719896/140‑1 (MQ=255)
                                                                                           cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                        <  1:1259208/140‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                     <  2:1509022/140‑1 (MQ=255)
                                                                                               aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACCAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                     <  1:1049658/140‑1 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAA‑AAAAAAACTCCTTTT‑CC‑GG‑AGAACCCCAACGGGGGAAAAGAAAATCAAAACCGTCGGGAATGACGAAAGGCAGGGGGGAAggg                                   >  2:591729/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCCTAA‑AAAACAACCTCCTGT‑CC‑GG‑AGAACCCCCAAGGGGGAAAAGAAATTCAATAACGCCGGGAATGGAGAAAAGCAAGGGAGAAggg                                   >  2:1069774/1‑140 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                <  1:155396/140‑1 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAAAAAAAAAGGGGCATAA‑AAAAAAAATCCTTTT‑TC‑GG‑GGAACCCCCCCGGGGGAAAAGAAAATCAATAACCACGGGAAAGTCGAAAGGCAGAGGGGAAGGGGAAc                               >  2:1055463/1‑140 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                             <  1:2057644/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                          <  1:1235371/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAA‑AAAAAAACTCCTTGT‑CC‑GG‑AGAACCCCAAAGGGGAAAAAGAAAATCAAAACCGTCGGGAATGACGAAAAGCAGGGGGGAAGGGGAAAgagaa                          >  2:1235371/1‑139 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCAGCAAAA‑CAAAGAAAGCCCTCT‑CC‑GG‑CGGAACCCCACGGGGGAAACGAAAATAAACAACCTCGGGAAGGACGCAAAGCAGGGGAGAAGGGCAACgggaa                          >  2:1926051/1‑139 (MQ=255)
                                                                                                           gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGGCGAAAGGCAGGTGAGAAGGGCAACGAGACTg                        <  2:447157/140‑1 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAACCAACTCCGTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                     <  1:1926051/140‑1 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                     <  1:591729/140‑1 (MQ=255)
                                                                                                                   cAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTa                <  2:1100516/140‑1 (MQ=255)
                                                                                                                   cAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTa                <  1:1320803/140‑1 (MQ=255)
                                                                                                                     gCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAA‑AAAACAACTCCTTGT‑CC‑GG‑GGAACCCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGGGAGAAGGGGAAAGAGACTGCAAATGTaat              >  2:1799844/1‑138 (MQ=255)
                                                                                                                     gCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAA‑AAAAAAACTCCTTGT‑CC‑GG‑GGAACCCCCACGGGGGAAAAGAAAATCAATAACGTCGGGAAAGACGAAAGGCAGGGGAGAAGGGGAAAGAGAATGCAAAAGTaat              >  2:1957315/1‑138 (MQ=255)
                                                                                                                           cggcATGGCGGGTAAAAAAAAGTGGCATAA‑CAAAAAACTCCCTGT‑CC‑GG‑GGAACCCCCACGGGGGAAACGAAAATCAATACCGTCGGGAATGAAGAAAGGCCGGTGAGAAGGGCAACGAGAATGCAAAAGTTCTGAAttt        >  2:852871/1‑140 (MQ=255)
                                                                                                                           cggcATGGCGGGTAAAAAAAAGGGGCATAA‑CAAACAACTCCCTGT‑CCGGG‑AAAACCCCAAAGGGG‑AAACGAAAATCAATACCGTCGGTAATGACGAAAGGGAGGGGAGAAAGGCAACGAGACCGCTAAAGTACTGAAatt        >  2:1577430/1‑140 (MQ=255)
                                                                                                                            ggcATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc       <  1:1886643/140‑1 (MQ=255)
                                                                                                                            ggcATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc       <  1:1810915/140‑1 (MQ=255)
                                                                                                                               aTGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg    <  1:1484360/140‑1 (MQ=255)
                                                                                                                               aTGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg    <  1:80971/140‑1 (MQ=255)
                                                                                                                                 ggCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa  <  1:1377552/140‑1 (MQ=255)
                                                                                                                                 ggCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa  <  2:14696/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                         
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAA‑CAAACAACTCCTTGT‑CC‑GG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTA  >  NC_000913/4568369‑4568637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑