BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB‑5–insA‑5	insB‑5, insA‑5

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	138 [0]	[0] 137	insB‑5–insA‑5	insB‑5,insA‑5

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	125 (1.090)	72/262	0.1	100%	intergenic (‑305/+16)	flhD/insB‑5	DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB
*	?	NC_000913	1979279 =	0 (0.000)	125 (1.090)	72/262	0.1	100%	intergenic (‑64/‑474)	insA‑5/uspC	IS1 protein InsA/universal stress protein C

Only 100 of 137 total aligned reads displayed.

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG  >  NC_000913/1979140‑1979417

tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt                                                                                                                                             <  1:1873911‑M2/1‑1 (MQ=255)

 ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgta                                                                                                                                            <  1:729891‑M2/2‑1 (MQ=255)

 ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgta                                                                                                                                            <  1:1308574‑M2/2‑1 (MQ=255)

   ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                          >  1:1256179‑M2/137‑140 (MQ=255)

        cttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                     >  2:1912576‑M2/132‑140 (MQ=255)

        cttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                     <  2:1860126‑M2/9‑1 (MQ=255)

         ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAt                                                                                                                                    >  1:1034096‑M2/131‑140 (MQ=255)

         ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAt                                                                                                                                    >  1:1419057‑M2/131‑140 (MQ=255)

          tatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                   >  1:1523644‑M2/130‑140 (MQ=255)

          tatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                   >  1:1646399‑M2/130‑140 (MQ=255)

           atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                     >  1:1652715‑M2/129‑137 (MQ=255)

           atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                     <  2:1652715‑M2/9‑1 (MQ=255)

           atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                  >  1:1325876‑M2/129‑140 (MQ=255)

           atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                  >  2:10100‑M2/129‑140 (MQ=255)

           atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                  >  2:253397‑M2/129‑140 (MQ=255)

              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                                                               >  1:80085‑M2/126‑140 (MQ=255)

                agatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                                                             >  1:1190227‑M2/124‑140 (MQ=255)

                    ttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg‑tttt                                                                                                                        <  1:1503885‑M2/21‑1 (MQ=255)

                        cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGgt                                                                                                                    <  1:553780‑M2/25‑1 (MQ=255)

                        cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGgt                                                                                                                    <  1:146884‑M2/25‑1 (MQ=255)

                        cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGgt                                                                                                                    <  1:1738977‑M2/25‑1 (MQ=255)

                                  cgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAAt                                                                                                          >  1:804158‑M2/106‑140 (MQ=255)

                                  cgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAAt                                                                                                          >  2:214737‑M2/106‑140 (MQ=255)

                                   gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGGTGTATTTCAAt                                                                                                          <  2:176339‑M2/36‑1 (MQ=255)

                                   gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATc                                                                                                         <  1:1451557‑M2/36‑1 (MQ=255)

                                            ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaataacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                >  2:690528‑M2/96‑140 (MQ=255)

                                                 cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                           >  1:332174‑M2/91‑140 (MQ=255)

                                                 cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                           >  1:1773860‑M2/91‑140 (MQ=255)

                                                 cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                           >  1:1291225‑M2/91‑140 (MQ=255)

                                                  actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                          <  2:1963529‑M2/51‑1 (MQ=255)

                                                  actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                          >  2:1603671‑M2/90‑140 (MQ=255)

                                                   ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                         <  2:2014752‑M2/52‑1 (MQ=255)

                                                    tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                        >  1:175985‑M2/88‑140 (MQ=255)

                                                    tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                        >  1:1576731‑M2/88‑140 (MQ=255)

                                                      cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                      >  1:922863‑M2/86‑140 (MQ=255)

                                                           acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                 >  2:1739111‑M2/81‑140 (MQ=255)

                                                           acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                 >  2:1955446‑M2/81‑140 (MQ=255)

                                                           acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                 >  2:1599074‑M2/81‑140 (MQ=255)

                                                           acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                 >  2:877360‑M2/81‑140 (MQ=255)

                                                            catacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                <  2:922863‑M2/61‑1 (MQ=255)

                                                              tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                              <  1:253397‑M2/63‑1 (MQ=255)

                                                                  acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                                                          <  2:1523644‑M2/67‑1 (MQ=255)

                                                                  acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                                                          >  2:965561‑M2/74‑140 (MQ=255)

                                                                     gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaa                                                                       >  2:190524‑M2/71‑140 (MQ=255)

                                                                     gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaa                                                                       >  2:249174‑M2/71‑140 (MQ=255)

                                                                     gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaa                                                                       >  2:1598429‑M2/71‑140 (MQ=255)

                                                                      aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                      >  2:287828‑M2/70‑140 (MQ=255)

                                                                       ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTTAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                     <  2:436846‑M2/72‑1 (MQ=255)

                                                                       ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                     <  2:1646399‑M2/72‑1 (MQ=255)

                                                                       ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                     >  2:978263‑M2/69‑140 (MQ=255)

                                                                        gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                    >  2:1727767‑M2/68‑140 (MQ=255)

                                                                        gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                    >  1:17077‑M2/68‑140 (MQ=255)

                                                                        gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                    <  1:1546588‑M2/73‑1 (MQ=255)

                                                                         gggggctgcgatttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                                   >  2:323537‑M2/67‑140 (MQ=255)

                                                                            gctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                <  1:1436039‑M2/77‑1 (MQ=255)

                                                                             ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                               >  2:2037705‑M2/63‑140 (MQ=255)

                                                                             ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                               >  1:187980‑M2/63‑140 (MQ=255)

                                                                             ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                               >  2:1653509‑M2/63‑140 (MQ=255)

                                                                             ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                               >  2:1295583‑M2/63‑140 (MQ=255)

                                                                              tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                                                              >  1:1161205‑M2/62‑140 (MQ=255)

                                                                                      tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                      <  2:1256179‑M2/87‑1 (MQ=255)

                                                                                      tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                      <  1:214737‑M2/87‑1 (MQ=255)

                                                                                      tcaataatgcgtgatgcagatcacacaaaacactcaataacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                      <  1:690528‑M2/87‑1 (MQ=255)

                                                                                           aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                                 <  2:1419057‑M2/92‑1 (MQ=255)

                                                                                             tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                               >  2:519987‑M2/47‑140 (MQ=255)

                                                                                             tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                               >  2:849384‑M2/47‑140 (MQ=255)

                                                                                             tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                               <  1:249174‑M2/94‑1 (MQ=255)

                                                                                             tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                               >  1:40604‑M2/47‑140 (MQ=255)

                                                                                              gcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                              >  1:411690‑M2/46‑140 (MQ=255)

                                                                                               cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                             <  1:928671‑M2/96‑1 (MQ=255)

                                                                                               cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                             >  1:655592‑M2/45‑140 (MQ=255)

                                                                                                    tgcagatcacacaaaagactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt                                        >  2:1294778‑M2/40‑140 (MQ=255)

                                                                                                         atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca                                   >  2:1069658‑M2/35‑140 (MQ=255)

                                                                                                          tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGTAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac                                  >  2:1500152‑M2/34‑140 (MQ=255)

                                                                                                          tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac                                  <  2:80085‑M2/107‑1 (MQ=255)

                                                                                                           cacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                 <  2:1034096‑M2/108‑1 (MQ=255)

                                                                                                            acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                >  2:787625‑M2/32‑140 (MQ=255)

                                                                                                             cacaaaactctcaatttcttaacataaatgTATAAGTCATACTTTTG‑TTTTGGATGTATCTCAATCTGTTAATAAGTTTTGCGCTACGCAAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTGGCGCACAGt                               <  2:1701513‑M2/110‑1 (MQ=255)

                                                                                                             cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                               <  1:1036505‑M2/110‑1 (MQ=255)

                                                                                                             cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                               <  1:10100‑M2/110‑1 (MQ=255)

                                                                                                              acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                 >  1:1122074‑M2/30‑137 (MQ=255)

                                                                                                              acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                 <  2:1122074‑M2/108‑1 (MQ=255)

                                                                                                              acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                              >  2:1998848‑M2/30‑140 (MQ=255)

                                                                                                                    cactcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa                        >  1:811087‑M2/24‑140 (MQ=255)

                                                                                                                     actcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                       >  1:2048409‑M2/23‑140 (MQ=255)

                                                                                                                       tcaattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt                     >  2:143058‑M2/21‑140 (MQ=255)

                                                                                                                        caattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTc                    >  1:1802945‑M2/20‑140 (MQ=255)

                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                   <  1:1949440‑M2/122‑1 (MQ=255)

                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                   <  1:978263‑M2/122‑1 (MQ=255)

                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                   <  2:287387‑M2/122‑1 (MQ=255)

                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                   <  1:519987‑M2/122‑1 (MQ=255)

                                                                                                                                 aacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat           >  1:718608‑M2/11‑140 (MQ=255)

                                                                                                                                 aacataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat           >  1:1967836‑M2/11‑140 (MQ=255)

                                                                                                                                   cataaatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataa         >  1:470648‑M2/9‑140 (MQ=255)

                                                                                                                                       aatgTATAAGTCATCCTTTTC‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat     <  1:941977‑M2/136‑1 (MQ=255)

                                                                                                                                       aatgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat     <  1:739126‑M2/136‑1 (MQ=255)

                                                                                                                                       aatgTATAAGTCATACTTTTG‑TTTGGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat     <  1:2005175‑M2/136‑1 (MQ=255)

                                                                                                                                        atgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc    >  1:1284009‑M2/4‑140 (MQ=255)

                                                                                                                                         tgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt   >  2:1693063‑M2/3‑140 (MQ=255)

                                                                                                                                         tgTATAAGTCATACTTTTG‑TTTTGGGTGTATTTC‑ATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg  <  2:1388543‑M2/138‑1 (MQ=255)

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTG‑TTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG  >  NC_000913/1979140‑1979417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`