| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 296,229 | Δ6 bp | coding (863‑868/1401 nt) | intF ← | CP4‑6 prophage; putative phage integrase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 296229 | 296234 | 6 | 51 [0] | [0] 51 | intF | CP4‑6 prophage; putative phage integrase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 296228 | 0 (0.000) | 51 (1.080) | 39/276 | 0.2 | 100% | coding (869/1401 nt) | intF | CP4‑6 prophage; putative phage integrase |
| ? | NC_000913 | 296235 = | 0 (0.000) | coding (862/1401 nt) | intF | CP4‑6 prophage; putative phage integrase | |||||
CGTTCACCTTCGATCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATTATTGAGGCTACGCACGGCACTAAACCAGCTTTTTAGTTGTTCCTTTTGCAGGCAATCATCAGCTTTACTCGCTGACACGGGAACCATTTTTCTTACGTTGTAATCTTGTGCCAGATCGCCAGGAATGATCCCTTGATA > NC_000913/296093‑296367 | cGTTCACCTTCGATCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggct > 2:370225‑M1/1‑136 (MQ=255) tCACCTTCGATCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacg > 2:381446‑M1/1‑133 (MQ=255) cACCTTCGATCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgc > 2:635197‑M1/1‑132 (MQ=255) ccTTCGATCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcac < 1:406517‑M1/140‑11 (MQ=255) gATCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcac < 1:370225‑M1/140‑16 (MQ=255) aTCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGTGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATgactacgcac < 1:199018‑M1/134‑11 (MQ=255) aTCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGTGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATgactacgcac > 2:199018‑M1/1‑124 (MQ=255) aTCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcact > 1:90964‑M1/1‑124 (MQ=255) tGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaac < 2:710867‑M1/140‑21 (MQ=255) tGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaac < 1:534039‑M1/140‑21 (MQ=255) gTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaacc > 1:626676‑M1/1‑119 (MQ=255) cTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccag < 2:174426‑M1/140‑24 (MQ=255) cTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccag < 1:587973‑M1/140‑24 (MQ=255) aaTTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagcttt > 2:218576‑M1/1‑113 (MQ=255) gCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagt < 1:381446‑M1/140‑33 (MQ=255) gCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagt > 1:424313‑M1/1‑108 (MQ=255) gCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTCAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagt > 2:264132‑M1/1‑108 (MQ=255) cATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagtt > 2:787003‑M1/1‑107 (MQ=255) cATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagtt > 1:536776‑M1/1‑107 (MQ=255) aTGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttg > 1:440652‑M1/1‑106 (MQ=255) aTTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgc < 1:629299‑M1/140‑45 (MQ=255) tttGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgca > 1:491072‑M1/1‑95 (MQ=255) gaagcgaCGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgct > 2:662828‑M1/1‑72 (MQ=255) gCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacggg < 1:218576‑M1/140‑77 (MQ=255) tcttcACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccat < 2:440652‑M1/140‑83 (MQ=255) ttcACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccattt < 2:424313‑M1/140‑85 (MQ=255) tcACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttt > 2:707512‑M1/1‑55 (MQ=255) tcACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttt > 2:176408‑M1/1‑55 (MQ=255) gCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttctt < 1:514943‑M1/140‑90 (MQ=255) gCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttctt > 2:762356‑M1/1‑51 (MQ=255) ccGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttctta > 2:75928‑M1/1‑50 (MQ=255) ccGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttctta < 1:176408‑M1/140‑91 (MQ=255) ccGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttctta < 2:76046‑M1/140‑91 (MQ=255) ccGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttctta < 1:762356‑M1/140‑91 (MQ=255) cAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaa < 1:726972‑M1/140‑99 (MQ=255) gTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatc < 2:491072‑M1/140‑101 (MQ=255) aGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttg > 1:701738‑M1/1‑37 (MQ=255) aaGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgcca < 2:549448‑M1/140‑109 (MQ=255) aGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccag < 1:662828‑M1/140‑110 (MQ=255) aGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccag < 2:706741‑M1/140‑110 (MQ=255) aGTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccag < 1:787003‑M1/140‑110 (MQ=255) gTACTTGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccaga > 2:249347‑M1/1‑30 (MQ=255) tGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccagatcgcc > 2:516484‑M1/1‑25 (MQ=255) tGGAGATAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccagatcgcc < 1:540295‑M1/140‑116 (MQ=255) gagaTAGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccagatcgccag < 1:75928‑M1/140‑118 (MQ=255) aGGCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccagatcgccaggaatg > 1:417214‑M1/1‑18 (MQ=255) ggCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtagtcttgtgccagatcgccaggaatga < 2:689698‑M1/140‑124 (MQ=255) gCCGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccagatcgccaggaatgat > 2:752125‑M1/1‑16 (MQ=255) cGATGCAATAGGATggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccagatcgccaggaatgatcc > 2:786599‑M1/1‑14 (MQ=255) tggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccagatcgccaggaatgatcccttgatatttttt > 1:516151‑M1/1‑1 (MQ=255) tggctacgcacggcactaaaccagctttttagttgttccttttgcaggcaatcatcagctttactcgctgacacgggaaccatttttcttacgttgtaatcttgtgccagatcgccaggaatgatcccttgatatttttt > 1:439624‑M1/1‑1 (MQ=255) | CGTTCACCTTCGATCTTGTCTTTAATTCGCATGCTTGACCATTTGAAATCTACGTCTGACCAGCGAAGCGACGCAATTTCTTCACGCCGAGCACCAGTGAGCAAAAGTACTTGGAGATAGGCCGATGCAATAGGATTATTGAGGCTACGCACGGCACTAAACCAGCTTTTTAGTTGTTCCTTTTGCAGGCAATCATCAGCTTTACTCGCTGACACGGGAACCATTTTTCTTACGTTGTAATCTTGTGCCAGATCGCCAGGAATGATCCCTTGATA > NC_000913/296093‑296367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |