New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4628780	NA (NA)	6 (0.130)	4/240	4.8	NA	noncoding (37/37 nt)	other	REP354b
	?	NC_000913	= 4633089	NA (NA)					intergenic (+3/+144)	trpR/yjjX	DNA‑binding transcriptional repressor TrpR/ITPase/XTPase
Rejected: Coverage evenness skew score above cutoff.

AAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGG  >  NC_000913/4632953‑4633214                                                                                                                                         |                                                                                                                                     aaaTGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGt                                                                                                                                   >  1:145175/1‑140 (MQ=255) aaaTGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGt                                                                                                                                   <  2:145175/140‑1 (MQ=255)    tGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAgg                                                                                                                                <  1:716599/140‑1 (MQ=255)     gAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGc                                                                                                                               <  1:82377/140‑1 (MQ=255)     gAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGc                                                                                                                               <  1:359218/140‑1 (MQ=255)           gCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATa                                                                                                                         >  2:429993/1‑140 (MQ=255)           gCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATa                                                                                                                         >  2:513821/1‑140 (MQ=255)            cGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATaa                                                                                                                        >  1:880240/1‑140 (MQ=255)            cGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGAAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATaa                                                                                                                        >  1:225871/1‑140 (MQ=255)             gTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAg                                                                                                                       <  2:295169/140‑1 (MQ=255)                aGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACg                                                                                                                    >  2:333172/1‑140 (MQ=255)                           gAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAg                                                                                                  >  2:93417/1‑140 (MQ=255)                           gAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGAAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAg                                                                                                  <  2:225871/140‑1 (MQ=255)                                cGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATc                                                                                             <  2:442003/140‑1 (MQ=255)                                       ggCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCAcc                                                                                      <  2:430336/140‑1 (MQ=255)                                         cATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGa                                                                                    <  1:513821/140‑1 (MQ=255)                                                  gaTTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGAt                                                                           >  1:639778/1‑140 (MQ=255)                                                      aCGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATgcgg                                                                       >  2:475626/1‑140 (MQ=255)                                                       cgcgTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATgcggc                                                                      >  1:365685/1‑140 (MQ=255)                                                          gTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTg                                                                   <  2:365685/140‑1 (MQ=255)                                                           tGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGa                                                                  <  1:342402/140‑1 (MQ=255)                                                           tGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATgc                                                                         >  2:206843/1‑140 (MQ=18)                                                              aTCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAAca                                                               <  1:333618/140‑2 (MQ=255)                                                                 tAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTg                                                                   <  2:788919/140‑1 (MQ=18)                                                                 tAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTg                                                                   <  2:46687/140‑1 (MQ=18)                                                                 tAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTg                                                                   <  1:206843/140‑1 (MQ=18)                                                                    cAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt                                                         <  1:333172/140‑1 (MQ=255)                                                                      gCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc                                                       >  1:820415/1‑140 (MQ=255)                                                                      gCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATcc                                                       >  1:352676/1‑140 (MQ=255)                                                                        cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACg                                                               >  1:295826/1‑130 (MQ=255)                                                                        cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACg                                                               <  2:295826/130‑1 (MQ=255)                                                                        cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt                                                         >  1:473295/1‑136 (MQ=255)                                                                        cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt                                                         <  2:377624/136‑1 (MQ=255)                                                                        cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt                                                         <  2:473295/136‑1 (MQ=255)                                                                        cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTAt                                                         >  1:377624/1‑136 (MQ=255)                                                                        cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGt                                                     >  2:68879/1‑140 (MQ=255)                                                                        cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGt                                                     >  1:328745/1‑140 (MQ=255)                                                                        cTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAACGCCGGATGCGGCGTGAACGCCTTATCCGt                                                     >  1:694601/1‑140 (MQ=255)                                                                                 gcgcCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAAt                                            >  1:408608/1‑140 (MQ=255)                                                                                        tCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTa                                     <  1:727939/140‑1 (MQ=255)                                                                                        tCGAGCTGCGCCAGTGGCTGGAAGAGGGGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCCTCCTACAAATACCCGTa                                     >  1:211079/1‑140 (MQ=255)                                                                                                          tGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGt                         >  2:500577/1‑134 (MQ=255)                                                                                                          tGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGt                         <  1:500577/134‑1 (MQ=255)                                                                                                           ggAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAg                  <  2:211079/140‑1 (MQ=255)                                                                                                            gAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAgg                 <  1:429993/140‑1 (MQ=255)                                                                                                            gAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGACATGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAgg                 <  2:5561/140‑1 (MQ=255)                                                                                                             aaGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGc                <  1:475626/140‑1 (MQ=255)                                                                                                             aaGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAACGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGc                <  2:694601/140‑1 (MQ=255)                                                                                                                           aaaaGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCgg  >  1:707336/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                     AAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGG‑‑‑‑‑‑‑CGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGG  >  NC_000913/4632953‑4633214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.