| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,702,865 | Δ2 bp | coding (3‑4/1005 nt)|coding (983‑984/984 nt) | dppF ← dppD ← |
dipeptide ABC transporter ATP binding subunit DppF dipeptide ABC transporter ATP binding subunit DppD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,702,864 | 0 | C | . | 97.1% | 133.2 / ‑2.2 | 34 | coding (5/1005 nt) | dppF | dipeptide ABC transporter ATP binding subunit DppF |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base . (18/15); total (19/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 3,702,865 | 0 | T | . | 97.1% | 131.6 / ‑2.0 | 34 | coding (4/1005 nt) coding (984/984 nt) | dppF dppD | dipeptide ABC transporter ATP binding subunit DppF dipeptide ABC transporter ATP binding subunit DppD |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (18/15); minor base A (1/0); total (19/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
CCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAGGGGCAGCGCGGGTTAAGC > NC_000913/3702726‑3702994 || ccACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTAca < 2:303502/140‑2 (MQ=255) gTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTAcatagt > 1:516024/1‑135 (MQ=255) aaacgaaacgCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTcc > 1:161560/1‑140 (MQ=255) aacgaaacgCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGTGTA‑‑CATAGTGTCGGCCTccc > 2:152405/1‑140 (MQ=255) aacgaaacgCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTccc > 1:53960/1‑140 (MQ=255) acgaaacgCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCg < 2:53960/140‑1 (MQ=255) aacgCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGTGTA‑‑CATAGTGTCGGCCTCCCGGcat < 1:152405/140‑1 (MQ=255) aacgCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGcat > 1:777077/1‑140 (MQ=255) aGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTgg > 2:472077/1‑140 (MQ=255) cgcTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGt < 1:448115/140‑1 (MQ=255) tttAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAAt < 1:52550/140‑1 (MQ=255) tttAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAAt < 2:161560/140‑1 (MQ=255) cGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCTGGCATCATCAAGTGGGTAATGGCATTTGGa > 1:633160/1‑140 (MQ=255) ccGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAAt > 2:657006/1‑126 (MQ=255) ccGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAAt < 1:657006/126‑1 (MQ=255) ccGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGa > 1:407217/1‑140 (MQ=255) cGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGAc < 2:777077/140‑1 (MQ=255) aaCATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTc > 2:160850/1‑140 (MQ=255) tGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCg < 2:482350/140‑1 (MQ=255) cTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGTCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGc < 2:186748/140‑1 (MQ=255) tcACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTc > 1:123150/1‑140 (MQ=255) tcACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTc > 2:379723/1‑140 (MQ=255) aaTGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGt > 2:330327/1‑140 (MQ=255) tttCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAg > 2:524921/1‑140 (MQ=255) tttCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAg > 1:169007/1‑140 (MQ=255) tCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAgcg < 1:472077/140‑1 (MQ=255) aGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGt < 2:96691/140‑1 (MQ=255) aGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGt > 1:96691/1‑140 (MQ=255) gCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGa > 1:775270/1‑128 (MQ=255) gCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGa < 2:775270/128‑1 (MQ=255) cGGTTGTTGCAGGGTGGGATCTTGCG‑‑CACATAGTGTCGGCCTCCCGGCATCATCAAGGGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGATCTTCAGCGCGACATCTGTCAGTGGCATatg > 2:507259/1‑138 (MQ=255) cGGTTGTTGCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAgg > 2:507258/1‑140 (MQ=255) tgCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAGGGGCAgcg < 1:507258/140‑1 (MQ=255) tgCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAGGGGCAgcg < 1:330327/140‑1 (MQ=255) tgCAGGGTGGCCTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACAGCTGTCAGTGGCATAGGGGCAgcg < 1:507259/140‑1 (MQ=255) ccTCTTGCGTA‑‑CATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAGGGGCAGCGCGGGTTAAgc > 1:315374/1‑140 (MQ=255) || CCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAGGGGCAGCGCGGGTTAAGC > NC_000913/3702726‑3702994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |