New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	15387 =	NA (NA)	5 (0.120)	5/224	3.8	16.7%	noncoding (1/1345 nt)	IS186	repeat region
	?	NC_000913	16732 =	25 (0.610)					intergenic (+175/+19)	insL‑1/hokC	IS186/IS421 transposase/protein HokC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACA  >  NC_000913/16598‑16861                                                                                                                                        |                                                                                                                                  cAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTc                                                                                                                              >  2:472135/1‑140 (MQ=33)       gCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCccgac                                                                                                                        >  1:834345/1‑138 (MQ=21)         cATTCGTGGGACAGACTCCCTGACACCCTACAAACCGCAATTGAAGAACGCGAGGCATCGTTTTAACGAGGCACCGAGGCGCCGCATTCTTCAGATGGTTCACCCCTT‑AAGTTAGCGCTTAGGGGATCACTCCCCGCCGt                                                                                                                      <  2:559329/140‑1 (MQ=11)           ttCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTg                                                                                                                    >  1:434953/1‑140 (MQ=40)                  gACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGACCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCCCTCCCCGCCGTTGCTCTTAc                                                                                                             <  1:470094/140‑1 (MQ=255)                       tATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGa                                                                                                        >  1:424462/1‑140 (MQ=255)                                 aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGa                                                                                                        >  2:756947/1‑130 (MQ=255)                                 aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGa                                                                                                        <  1:756947/130‑1 (MQ=255)                                 aGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGcc                                                                                              >  2:331079/1‑140 (MQ=255)                                   ccTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGt                                                                                            >  2:619957/1‑140 (MQ=255)                                   ccTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGt                                                                                            >  1:355645/1‑140 (MQ=255)                                   ccTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGt                                                                                            >  2:719310/1‑140 (MQ=255)                                                                             aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGAtgt                                                         <  1:227164/133‑1 (MQ=255)                                                                             aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGAtgt                                                         >  2:227164/1‑133 (MQ=255)                                                                             aGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTc                                                  >  1:708390/1‑140 (MQ=255)                                                                               gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTcac                                                >  2:432562/1‑140 (MQ=255)                                                                                cACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTcaca                                               >  1:748622/1‑140 (MQ=255)                                                                                        cGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCCCTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCtt                                       <  1:109839/140‑1 (MQ=255)                                                                                        cGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCtt                                       >  1:459179/1‑140 (MQ=255)                                                                                        cGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGACGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCtt                                       <  2:834345/140‑1 (MQ=255)                                                                                          tCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCtttt                                     >  1:538872/1‑140 (MQ=255)                                                                                                            tccaCCCTTAAAGTTGGCGTTTAGGGAACCCCCCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGcgccgc                    <  2:538872/137‑1 (MQ=255)                                                                                                            tCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCGACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCgccgcc                   >  1:10021/1‑140 (MQ=255)                                                                                                            tCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCgccgcc                   >  1:244637/1‑140 (MQ=255)                                                                                                            tCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGCCTTTTCTCGTTACCAGCgccgcc                   >  2:678573/1‑140 (MQ=255)                                                                                                            tCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTAACAGAGGTCTTTTCTCGTTACCAGCgccgcc                   >  2:2794/1‑140 (MQ=255)                                                                                                                   tt‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcgg            >  2:136032/1‑140 (MQ=255)                                                                                                                      aaGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcggcg          >  2:257285/1‑140 (MQ=255)                                                                                                                      aaGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTAcggcg          >  2:240936/1‑140 (MQ=255)                                                                                                                           aGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGAt     >  1:673830/1‑140 (MQ=255)                                                                                                                           aGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGAt     >  2:510390/1‑140 (MQ=255)                                                                                                                              gcTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGGGATACa  >  2:799586/1‑140 (MQ=255)                                                                                                                                        |                                                                                                                                  CAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTT‑AAGTTAGCGCTTATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACA  >  NC_000913/16598‑16861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.