| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,047,381 | Δ69 bp | coding (497‑565/2097 nt) | gfcD ← | putative lipoprotein GfcD |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1047381 | 1047449 | 69 | 60 [0] | [0] 60 | gfcD | putative lipoprotein GfcD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1047380 | 0 (0.000) | 55 (0.680) | 38/260 | 0.9 | 100% | coding (566/2097 nt) | gfcD | putative lipoprotein GfcD |
| ? | NC_000913 | 1047450 = | 0 (0.000) | coding (496/2097 nt) | gfcD | putative lipoprotein GfcD | |||||
AATCATTCTGGTAATTGTTTCCATCGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATCGTGAGACTCTGCGCGATGACAATATTTATCGCTCACCCGGCAAAACGGGTTGGTAATATTGCCCGCATTACCGGCGTAGCCCCATGCCATCCCGAGGGTGAAATCAAATGGCCCCGCTTGCTTGCTGGCCACCAGAT > NC_000913/1047249‑1047518 | aaTCATTCTGGTAATTGTTTCCATCGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcg < 2:1013862‑M1/140‑9 (MQ=255)aaTCATTCTGGTAATTGTTTCCATCGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcg < 2:1371407‑M1/140‑9 (MQ=255) ttCTGGTAATTGTTTCCATCGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGACACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagcc < 1:1365372‑M1/140‑14 (MQ=255) ttCCATCGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccg < 2:142383‑M1/140‑27 (MQ=255) ccATCGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgag > 1:1030026‑M1/1‑112 (MQ=255) aTCGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgaggg < 2:663381‑M1/140‑31 (MQ=255) tCGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggt > 2:348176‑M1/1‑109 (MQ=255) cGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtg < 2:302420‑M1/140‑33 (MQ=255) ttCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaat > 2:1308800‑M1/1‑104 (MQ=255) ttCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatgg < 2:519915‑M1/140‑44 (MQ=255) tCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggc > 2:1250610‑M1/1‑96 (MQ=255) tCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggc > 1:575034‑M1/1‑96 (MQ=255) aCGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccg < 1:1299557‑M1/140‑49 (MQ=255) gggATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgct > 1:834392‑M1/1‑86 (MQ=255) ttCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgct > 2:446433‑M1/1‑82 (MQ=255) tCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagcccaatgccatcccgagggtgaaatcaaatggccccgcttgcttgctg > 2:144355‑M1/1‑81 (MQ=255) aCGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggcc < 2:575034‑M1/140‑63 (MQ=255) ggCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccac > 1:273362‑M1/1‑76 (MQ=255) ggCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctgg > 2:381584‑M1/1‑76 (MQ=255) ggCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctgg < 1:381584‑M1/136‑61 (MQ=255) tttGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccaga > 1:1128903‑M1/1‑72 (MQ=255) tttGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccaga > 1:1429075‑M1/1‑72 (MQ=255) ttGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgctatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagat < 1:1250610‑M1/140‑70 (MQ=255) aTACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatact < 1:348176‑M1/140‑73 (MQ=255) tCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcacc > 1:285312‑M1/1‑64 (MQ=255) tCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctgg < 2:973197‑M1/124‑61 (MQ=255) tCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctgg > 1:973197‑M1/1‑64 (MQ=255) aaTGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgt > 2:350106‑M1/1‑62 (MQ=255) aaTGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgt > 1:903104‑M1/1‑62 (MQ=255) aaTGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgt > 2:829041‑M1/1‑62 (MQ=255) taccgccaaAGATGGAACCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggagaaatcaaatggcccggcttgcttgctggccaccagatacccaccgaca > 2:79748‑M1/3‑60 (MQ=255) tGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtca > 2:64443‑M1/1‑60 (MQ=255) tGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtca > 2:778946‑M1/1‑60 (MQ=255) tGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtca > 1:978751‑M1/1‑60 (MQ=255) cgccAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaa > 2:951697‑M1/1‑57 (MQ=255) cgccAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaa < 1:951697‑M1/139‑83 (MQ=255) ccAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacag > 1:1021756‑M1/1‑55 (MQ=255) cAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacaga < 2:978751‑M1/140‑87 (MQ=255) cAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagcccaatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacaga < 1:144355‑M1/140‑87 (MQ=255) aaGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacc > 2:628863‑M1/1‑52 (MQ=255) aGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagaccc < 1:819224‑M1/140‑90 (MQ=255) gATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccg < 1:473078‑M1/140‑91 (MQ=255) gATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccg < 1:627113‑M1/140‑91 (MQ=255) aTGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgt < 1:524144‑M1/140‑92 (MQ=255) aTGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgt < 2:903104‑M1/140‑92 (MQ=255) aTGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgt < 1:64443‑M1/140‑92 (MQ=255) aTGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgt < 1:778946‑M1/140‑92 (MQ=255) ccGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagca > 1:1368355‑M1/1‑42 (MQ=255) gggCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaat > 1:1290220‑M1/1‑40 (MQ=255) ggCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgt > 1:882836‑M1/1‑39 (MQ=255) ggCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgt < 2:882836‑M1/130‑92 (MQ=255) aGATATCGCTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaatatcacgttta < 2:1290220‑M1/140‑111 (MQ=255) cTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaatatcacgtttaccaaacg > 1:1389301‑M1/1‑22 (MQ=255) cTAAAGCTGATATCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaatatcacgtttaccaaacg < 2:1389301‑M1/139‑118 (MQ=255) tatCGCCCGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaatatcacgtttaccaaacgccacttgcggt < 2:273362‑M1/140‑129 (MQ=255) ccGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaatatcacgtttaccaaacgccacttgcggtagccag > 1:246759‑M1/1‑6 (MQ=255) cGCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaatatcacgtttaccaaacgccacttgcggtagccagt < 2:1021756‑M1/140‑136 (MQ=255) gCATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaatatcacgtttaccaaacgccacttgcggtagccagta < 1:929953‑M1/140‑137 (MQ=255) cATtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaatatcacgtttaccaaacgccacttgcggtagccagtaa > 1:1187890‑M1/1‑3 (MQ=255) aTtaccggcgtagccccatgccatcccgagggtgaaatcaaatggccccgcttgcttgctggccaccagatactcaccgtcaaacagacccgtaccagcaatatcacgtttaccaaacgccacttgcggtagccagtaac < 2:1368355‑M1/140‑139 (MQ=255) | AATCATTCTGGTAATTGTTTCCATCGTATTCGAGTTTCAGACGCAGGGGATTCCACGGCGTTTGATACTCAATGCCGCCAAAGATGGAAGCCGGGCCACGAAAGATATCGCTAAAGCTGATATCGCCCGCATCGTGAGACTCTGCGCGATGACAATATTTATCGCTCACCCGGCAAAACGGGTTGGTAATATTGCCCGCATTACCGGCGTAGCCCCATGCCATCCCGAGGGTGAAATCAAATGGCCCCGCTTGCTTGCTGGCCACCAGAT > NC_000913/1047249‑1047518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |