Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	406,302	G→T	intergenic (+80/‑103)	yaiI → / → aroL	DUF188 domain‑containing protein YaiI/shikimate kinase 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	406,302	0	G	T	100.0%	238.2 / NA	67	intergenic (+80/‑103)	yaiI/aroL	DUF188 domain‑containing protein YaiI/shikimate kinase 2
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (44/23);  total (44/23)

GCCTTTGCCGCGGAGCTGGAGAAGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATCGGGCCTCGG  >  NC_000913/406166‑406437                                                                                                                                         |                                                                                                                                        gCCTTTGCCGCGGAGCTGGAGAAGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAAt                                                                                                                                      >  1:797067/1‑140 (MQ=255) gCCTTTGCCGCGGAGCTGGAGAAGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAAt                                                                                                                                      <  2:1289828/140‑1 (MQ=255)          gcgGAGCTGGAGAAGTGGTAGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGTGATTTTCACTTTAAGTGTAATTTTTTCttt                                                                                                                             <  2:574426/140‑1 (MQ=255)               gCTGGAGAAGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAAt                                                                                                                        <  2:1032307/140‑1 (MQ=255)               gCTGGAGAAGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAAt                                                                                                                        <  2:1108589/140‑1 (MQ=255)                cTGGAGAAGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATc                                                                                                                       >  2:1221715/1‑140 (MQ=255)                    agaAGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGaaa                                                                                                                   <  2:391942/140‑1 (MQ=255)                    agaAGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGaaa                                                                                                                   <  2:1115184/140‑1 (MQ=255)                       aGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTg                                                                                                                <  2:1422090/140‑1 (MQ=255)                           gtggCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACt                                                                                                            <  1:697776/140‑1 (MQ=255)                           gtggCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACt                                                                                                            >  1:760514/1‑140 (MQ=255)                             ggCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAg                                                                                                          >  2:180547/1‑140 (MQ=255)                              gCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGt                                                                                                         <  1:180547/140‑1 (MQ=255)                              gCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGt                                                                                                         <  1:679660/140‑1 (MQ=255)                                   aaGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGAt                                                                                                    >  1:436191/1‑140 (MQ=255)                                        cAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAATGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTAt                                                                                               >  2:1318639/1‑140 (MQ=255)                                                       tAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCAt                                                                                <  1:988920/140‑1 (MQ=255)                                                                     tattTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCa                                                                                 <  1:416374/125‑1 (MQ=255)                                                                     tattTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCa                                                                                 >  2:416374/1‑125 (MQ=255)                                                                         tACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTcgccgc                                                              >  1:1115991/1‑140 (MQ=255)                                                                          acacTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCa                                                             <  2:1243644/140‑1 (MQ=255)                                                                              ttCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGc                                                         >  2:869310/1‑140 (MQ=255)                                                                              ttCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGc                                                         >  1:701122/1‑140 (MQ=255)                                                                              ttCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGc                                                         >  2:965765/1‑140 (MQ=255)                                                                               tCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCg                                                        >  1:446968/1‑140 (MQ=255)                                                                                 aTTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGAc                                                      <  1:57177/140‑1 (MQ=255)                                                                                 aTTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGAc                                                      >  2:897452/1‑140 (MQ=255)                                                                                   tCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCt                                                    >  1:431155/1‑140 (MQ=255)                                                                                     ttGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCACTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTAt                                                  <  2:881672/140‑1 (MQ=255)                                                                                        aaTATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGAc                                                      <  1:700480/133‑1 (MQ=255)                                                                                        aaTATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGAc                                                      >  2:700480/1‑133 (MQ=255)                                                                                            tttattGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGaa                                           >  1:452544/1‑140 (MQ=255)                                                                                                         tAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGac                              >  1:527096/1‑140 (MQ=255)                                                                                                         tAAGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGCGGAAAACCCACGATGac                              >  2:208456/1‑140 (MQ=255)                                                                                                           aGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGacac                            >  1:807048/1‑140 (MQ=255)                                                                                                           aGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGa                               <  1:716198/137‑1 (MQ=255)                                                                                                           aGGGGTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGa                               >  2:716198/1‑137 (MQ=255)                                                                                                            ggggTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGAcaca                           <  2:701122/140‑1 (MQ=255)                                                                                                            ggggTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGAcaca                           <  1:208456/140‑1 (MQ=255)                                                                                                              ggTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAAc                         >  2:423563/1‑140 (MQ=255)                                                                                                              ggTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAAc                         <  2:436191/140‑1 (MQ=255)                                                                                                              ggTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAAc                         >  1:1278184/1‑140 (MQ=255)                                                                                                              ggTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAAc                         >  1:1444938/1‑140 (MQ=255)                                                                                                              ggTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAAc                         >  2:738203/1‑140 (MQ=255)                                                                                                              ggTGTATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACACACGATGACACAAc                         >  1:1302445/1‑140 (MQ=255)                                                                                                                tgtATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGacac                            >  1:1435741/1‑135 (MQ=255)                                                                                                                tgtATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGacac                            <  2:1435741/135‑1 (MQ=255)                                                                                                                tgtATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACct                       >  1:994603/1‑140 (MQ=255)                                                                                                                tgtATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACct                       >  1:1365689/1‑140 (MQ=255)                                                                                                                tgtATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACct                       >  2:896789/1‑140 (MQ=255)                                                                                                                  tATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACg                                   >  2:736211/1‑126 (MQ=255)                                                                                                                  tATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACg                                   <  1:736211/126‑1 (MQ=255)                                                                                                                  tATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACctct                     >  1:1030182/1‑140 (MQ=255)                                                                                                                  tATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACctct                     >  2:1328082/1‑140 (MQ=255)                                                                                                                  tATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACctct                     >  2:1112910/1‑140 (MQ=255)                                                                                                                  tATTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACctct                     >  1:571040/1‑140 (MQ=255)                                                                                                                   aTTGAGATTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCtt                    >  2:1068468/1‑140 (MQ=255)                                                                                                                       agaTTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTc                >  2:1381032/1‑140 (MQ=255)                                                                                                                       agaTTTTCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTc                >  1:28432/1‑140 (MQ=255)                                                                                                                            ttCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATc           >  1:1413362/1‑140 (MQ=255)                                                                                                                            ttCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATc           >  2:553108/1‑140 (MQ=255)                                                                                                                            ttCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATc           >  1:1165836/1‑140 (MQ=255)                                                                                                                            ttCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATc           >  2:589549/1‑140 (MQ=255)                                                                                                                            ttCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATc           >  1:1415873/1‑140 (MQ=255)                                                                                                                            ttCACTTTAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATc           >  1:713144/1‑140 (MQ=255)                                                                                                                                  ttAAGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATCGGGCCt     <  1:1112910/140‑1 (MQ=255)                                                                                                                                     aGTGTAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATCGGGCCTCgg  >  1:696202/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                        GCCTTTGCCGCGGAGCTGGAGAAGTGGTGGCTGGAAGTGCAACGTAGTCGTGGCTAAATGTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGATGACACAACCTCTTTTTCTGATCGGGCCTCGG  >  NC_000913/406166‑406437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑