mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 38.9% | 37.4 / 19.0 | 36 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,429,984 | 0 | T | G | 31.8% | 77.4 / 17.0 | 44 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 646,747 | 0 | T | G | 29.2% | 37.4 / 12.2 | 24 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 550,188 | 0 | G | T | 25.0% | 87.9 / 21.8 | 36 | A188S (GCG→TCG) | ylbF | DUF2877 domain‑containing protein YlbF |
| * | NC_000913 | 3,404,215 | 0 | T | G | 24.5% | 111.9 / 11.5 | 49 | G244G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.5% | 66.1 / 15.6 | 34 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,404,218 | 0 | T | G | 20.4% | 115.0 / 11.6 | 49 | G245G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 375103 = | NA (NA) | 18 (0.390) +T |
7/274 | 3.4 | NA | noncoding (16/36 nt) | other | REP31d |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 377353 = | NA (NA) | 7 (0.190) +30 bp |
4/216 | 3.7 | NA | noncoding (18/37 nt) | other | REP32a |
| ? | NC_000913 | 4325850 = | NA (NA) | intergenic (‑109/+549) | yjdN/yjdM | conserved protein YjdN/conserved protein YjdM | |||||
| * | ? | NC_000913 | 375204 = | NA (NA) | 13 (0.280) +T |
6/274 | 3.7 | NA | noncoding (16/36 nt) | other | REP31f |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 340035 = | NA (NA) | 9 (0.190) | 6/274 | 3.7 | NA | coding (243/297 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 375124 = | NA (NA) | 4 (0.120) | 3/192 | 3.8 | NA | intergenic (+243/‑335) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377530 = | NA (NA) | intergenic (+219/+5) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 10 (0.230) | 5/260 | 3.9 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 7 (0.200) | 3/202 | 4.0 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | NA (NA) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 1287254 | 28 (0.600) | 4 (0.090) | 4/258 | 4.3 | 10.6% | noncoding (75/85 nt) | tyrV | tRNA‑Tyr |
| ? | NC_000913 | = 1287615 | 41 (0.930) | noncoding (8/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 1287254 | 28 (0.600) | 4 (0.090) | 4/260 | 4.3 | 11.7% | noncoding (75/85 nt) | tyrV | tRNA‑Tyr |
| ? | NC_000913 | = 1287321 | 34 (0.770) | noncoding (8/85 nt) | tyrV | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 608007 = | NA (NA) | 4 (0.110) | 3/224 | 4.3 | 8.5% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 609352 = | 43 (1.130) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||