Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,556,2070TC37.9% 83.6 / 34.9 66S215G (AGT→GGT) ‡rtcARNA 3'‑terminal phosphate cyclase
Reads supporting (aligned to +/- strand):  ref base T (37/4);  new base C (0/25);  total (37/29)
Fisher's exact test for biased strand distribution p-value = 2.26e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCC  >  NC_000913/3556075‑3556343
                                                                                                                                     |                                                                                                                                        
cACGGACGCTCTTTTCACCGACAAAAAAAAGGCGTCGGGTTATTTTTTCGCTTTCGACTTCAAGCGAGACGGTTTTCCCCGCCCCCTGGTCGCGGGGAAGGTTATGAATTTTTTGTTCATGCGGGAAAAAC‑CCCCCCGcc                                                                                                                                   <  2:454618/140‑1 (MQ=255)
   tGACGCTTTTTTCCCCGACAAAAAAAAAGCGTTGGGTGTTTTTTTCTCTTTCGACTTCAAGCGAGACGGTATTCCCCGGCCCCGGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGAAAAAC‑CCCCCCGCCAgt                                                                                                                                <  2:673538/140‑1 (MQ=255)
   tGACGCTTTTTTCCCCGACAAAAAAAAAGCGTTCGGTGATTTTTTCACTTTCGACTTCAAGCGAGACGGTATTCCCCGGCCCCGGGTCGCGGGGAAGTTTATAAATTTTCTGTTCATGCAGGAAAAAC‑CCCCCCGCCAgt                                                                                                                                <  2:1338113/140‑1 (MQ=255)
    gccgcgCTTTCCCCCGACGAAAAAAAGGCGTTCGGTGATTTTTTCACTTCCGACTTCAAGCGAGAGGGTATTCCCCGCCCCCGGGCCGCGCGGCAGTTTATGAATATTCTGTTCATGCAGGAAAAAC‑CCCCCCGCCAgtg                                                                                                                               <  2:2059695/138‑1 (MQ=255)
         gtttttCCCCGACAAAAAAAAAGCGTTGGGTGTTTTTTTCACTTTCTACTTAAAGCGAGACGTTTTTCCCCGGCCCCTGGTCGCGCGGCAGTTTATGAATTTTCTGTTCATGAAGGAAAAAC‑CCCCCCGCCAGTGTAGCg                                                                                                                          <  2:2288343/138‑1 (MQ=255)
            ttcccccGACAAAAAAAAAGCGTTGGGTGATTTTTTCCCTTTCGACTTAAGGCGAGACGTTATTCCCCGGCCCCGGGCCGCGCGGCAGGTTATAAATTTTCTGTTCATGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGAtt                                                                                                                       <  2:659081/135‑1 (MQ=255)
             tccACCGACAAAAAAAAAGCGTTCGGTGATTTTTTCCTTTTCGACTTCAAGCGAGACGGTATTCCCCGCCCCCTGGTCGCGCGGCAGTTTATAAATATTCTGTTCAGGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGAttt                                                                                                                      <  2:1559416/138‑1 (MQ=255)
               cACCGACGAAAAAAACGCTTTCGGTGATGTTTTCCGTTGCGGCTACAAGCGAGGCGTTATTCCCCGCCCCCTGGGCGCGCGGAGGTTTATGAATATTCTGTCCACGGAGGAAAAAC‑CTCCCCGCCAGTGTAGCGATTTCa                                                                                                                    <  2:207775/140‑1 (MQ=255)
                 ccGACAAAAAAAAAGCGTTCGGTGATTTTTTCCCTTTCGACTTAAAGCGAGACGTTATTCCCCGCCCCCGGGCCGCGGGGAGGTTTATAAATTTTCTGTTCATGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACg                                                                                                                  <  2:1302259/140‑1 (MQ=255)
                   gagaaaaaaaaaGCGTTGGTTGATTTTTTCCCTTTCGCCTTAAGGCGAGACGGTTTTCCCCGCCCCCTGGTCGGGGGGCGGGTTATAAATATTCTTTTCATGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCt                                                                                                                <  2:842688/134‑1 (MQ=255)
                   gacgacAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCt                                                                                                                >  2:2396138/1‑140 (MQ=255)
                   gacgacAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCt                                                                                                                >  1:778437/1‑140 (MQ=255)
                    acgacAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTc                                                                                                               >  2:18513/1‑140 (MQ=255)
                     cgacAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCa                                                                                                              >  2:858746/1‑140 (MQ=255)
                     cgacAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCa                                                                                                              >  2:1482909/1‑140 (MQ=255)
                              ggCGTTGGGTGATTTTTTCATTTTCGACTCAAAGCGAGACGGTATTCCCGGCCCCCGGGGCGCGCGGCAGGTTATAAATATTCTTTTGAGGGAGGGAAAAC‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATgg                                                                                                     <  2:541864/139‑1 (MQ=255)
                              ggCGTTCGGTGATTTTTTCATTTTCGACTTCAAGCGAGACGTTATTCCCCGCCCCCGGGCCGCGCGGCGGTTTATAAATTTTCTGTTCAGGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATgg                                                                                                     <  2:433306/139‑1 (MQ=255)
                                  ttgggTTATTTTTTCCCTTTCGACTTAAAGCGAGACGGTATTCCCCGGCCCCGGGCCGCGCGGCAGTTTATAAATTTTCTGTTCATGCGGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGcgcg                                                                                                 <  2:1001980/137‑1 (MQ=255)
                                   tgggTGATTTTTTCCCTTTCGACTTCAAGCGAGACGGTATTCCCCGCCCCCTGGTCGCGCGGAAGGTTATGAATTTTTTGTTCATGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCgg                                                                                                <  2:778437/138‑1 (MQ=255)
                                   tCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCgg                                                                                                >  1:1395331/1‑140 (MQ=255)
                                     ggTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGca                                                                                              >  1:1314553/1‑140 (MQ=255)
                                       taattttttCCCTTTCGCCTTAAAGCGAGAGGGTATTCCCCGCCCCCTGGCCGCGCGGCAGTTTAAGAATTTTTTGTTCATGCAGGGAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGcaca                                                                                            <  2:890051/135‑1 (MQ=255)
                                       tGATTTTTTCACTTTCGACTTCAAGCGAGACGGTATTCCCCGGCCCGGGTTCGCGCGGCGGTTTATAAATTTTTTGTTCATGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGcaca                                                                                            <  2:1576932/140‑1 (MQ=255)
                                          ttttttCCCTTTCGACTTCAAGGGAGACGGTATTCCCCGGCCCCGGGCCGCGGGGCAGTTTATGAATATTCTGTTAATGGAGGAAAAAA‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCa                                                                                         <  2:1314553/138‑1 (MQ=255)
                                          ttttttCACTTTCGCCTCAAAGCGAGGCGTTTTTCCCCGGCCCCGGGTCGCGGGGCAGTTTATAAATTTTCTGTTCATG‑AGGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCa                                                                                         <  2:2348812/138‑1 (MQ=255)
                                           tttttCACTTCCAATTACAAGCGAGCCGGTATTCCCCGGCCCGTGGCCGCGGGAAAGTTTAAGAATATTCTGTTCAGGAAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAg                                                                                        <  2:159787/139‑1 (MQ=255)
                                             tttCCCTCTCCATTTCAGGCGAGACGGTATTCCCCGGCCCCGGGCCGCGGGGCCGGTTATAAATATCCTGTTCATGCAGGAAAAAC‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCt                                                                                      <  2:1002909/140‑1 (MQ=255)
                                              ttCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTa                                                                                     >  1:1576932/1‑140 (MQ=255)
                                               tCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTaa                                                                                    >  1:890051/1‑140 (MQ=255)
                                                 aCTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATa                                                                                  >  1:1808825/1‑140 (MQ=255)
                                                    ttgcaCTACAGGCGAGAGGTTATTCCCCGGCCCCTGGTCGCGGGGCAGGTTATAAATTTTTTTTTCAGGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGaa                                                                               <  2:401092/136‑1 (MQ=255)
                                                    ttCGACTTAAGGGGAGACGTTATCCCCCGCCCCCGGGCCGGGGGGAAGTTTATAAATTTTCTGTTCATG‑AGGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGaa                                                                               <  2:1395331/140‑1 (MQ=255)
                                                       gatttCAAGCGAGACGGTATTCCCCGCCCCCTGGTCGCGCGGCAGGTTATGAATTTTCTGTTCAGGAAGGAAAAAA‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACtt                                                                            <  2:941466/137‑1 (MQ=255)
                                                        aCTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTtc                                                                           >  1:97796/1‑140 (MQ=255)
                                                            aaaGCAAGACGTTATACCCCGCCCCTTGCCCGCGCGGCAGGTTATTAATATTTTTTTCAGGGAGGGAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCa                                                                       <  2:1543371/139‑1 (MQ=255)
                                                                 gagaCGTTATTCCCCGCCCCCGGGTCGCGCGGCAGGTTATAAATTTTCTGTTCATGAAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCAt                                                                  <  2:889419/140‑1 (MQ=255)
                                                                   gaCGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATCCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCt                                                                >  1:1316177/1‑140 (MQ=255)
                                                                    aCGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTg                                                               >  1:1874665/1‑140 (MQ=255)
                                                                         aTTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACaa                                                          >  1:2341271/1‑140 (MQ=255)
                                                                           tccccGCCCCCTGGTCGCGCGGCAGTTTATAAATATTCTGTTCATGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATg                                                        <  1:383431/138‑1 (MQ=255)
                                                                             cccGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGtc                                                      >  1:889419/1‑139 (MQ=255)
                                                                                 gCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcg                                                  >  2:1570071/1‑140 (MQ=255)
                                                                                  ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  2:1281984/1‑140 (MQ=255)
                                                                                  ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  1:74963/1‑140 (MQ=255)
                                                                                  ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  1:437836/1‑140 (MQ=255)
                                                                                         ccgcgcgGCAGTTTATAAATTTTCTGTCCATGAAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGcc                                          <  2:1416156/139‑1 (MQ=255)
                                                                                         ccgcgcgGCAGGTTATGAATATTCTGTTCAGGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGcc                                          <  1:834151/139‑1 (MQ=255)
                                                                                           gcgggGAAGTTTATAAATTTTTTGTTCATGAAGGAAAAAC‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCaa                                        <  2:94952/140‑1 (MQ=255)
                                                                                                 gggtttATGAATTTTCTTTTCAGGCAGGAAAAAC‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  1:2155346/136‑1 (MQ=255)
                                                                                                 cAGTTTATAAATATTTTGTTCAGGAAGAAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  2:1808825/140‑1 (MQ=255)
                                                                                                 cAGGTTATGAATATTCTGTTCAGGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  1:1985606/140‑1 (MQ=255)
                                                                                                 cAGGTTATAAATTTTCTGTTCAGGAAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  1:2396138/140‑1 (MQ=255)
                                                                                                 agacagaTGAATTTTCTGTTCATGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  2:834096/134‑1 (MQ=255)
                                                                                                              ttttGTTCAGGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGa                     <  1:1968764/137‑1 (MQ=255)
                                                                                                              ttCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  1:1131630/127‑1 (MQ=255)
                                                                                                              ttCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  >  2:1131630/1‑127 (MQ=255)
                                                                                                              ttCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGCAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGa                     >  2:1048274/1‑140 (MQ=255)
                                                                                                               tCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt                    >  2:2047305/1‑140 (MQ=255)
                                                                                                               tCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt                    >  2:1688976/1‑140 (MQ=255)
                                                                                                               tCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt                    >  2:1352487/1‑140 (MQ=255)
                                                                                                               tCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGACACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt                    >  2:950614/1‑140 (MQ=255)
                                                                                                                  tttCATGAAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGcc                 <  2:2341271/139‑1 (MQ=255)
                                                                                                                  gTTCATGCAGGGAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTa                          <  1:109711/131‑1 (MQ=255)
                                                                                                                  gTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCTAGTTGCAAGGTGTTAAACGATGcc                 >  2:2220338/1‑140 (MQ=255)
                                                                                                                  gTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTa                          >  2:109711/1‑131 (MQ=255)
                                                                                                                  gTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAAcctgtct                 >  1:834096/1‑134 (MQ=255)
                                                                                                                  gTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGGTGcc                 >  2:513016/1‑140 (MQ=255)
                                                                                                                  gTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGcc                 >  2:1831110/1‑140 (MQ=255)
                                                                                                                  gTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGcc                 >  2:2156496/1‑140 (MQ=255)
                                                                                                                   ttCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGGTGCCa                <  1:513016/140‑1 (MQ=255)
                                                                                                                   ttCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa                >  2:2196156/1‑140 (MQ=255)
                                                                                                                   ttCATGCAGGAAAAAC‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa                <  2:794729/140‑1 (MQ=255)
                                                                                                                    tCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCTCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCAc               >  2:2262723/1‑140 (MQ=255)
                                                                                                                       tGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACggg            >  2:8888/1‑140 (MQ=255)
                                                                                                                        gCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGc           >  1:1693937/1‑140 (MQ=255)
                                                                                                                             gAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGAc      >  1:502620/1‑140 (MQ=255)
                                                                                                                              aaaac‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACt     <  1:1281984/140‑1 (MQ=255)
                                                                                                                                  a‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTcc  <  2:1619652/139‑1 (MQ=255)
                                                                                                                                  a‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTcc  >  1:1619652/1‑139 (MQ=255)
                                                                                                                                     |                                                                                                                                        
CACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAAA‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCC  >  NC_000913/3556075‑3556343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑