BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,504,131	T→C	V25A (GTA→GCA)	yjhB →	putative sialic acid transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,504,131	0	T	C	100.0%	802.6 / NA	207	V25A (GTA→GCA)	yjhB	putative sialic acid transporter
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (106/101); total (106/101)

Only 100 of 208 total aligned reads displayed.

ATTGTTGAGGCTCCCTAATATTTACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGTATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGG  >  NC_000913/4503997‑4504260

  tgttgAGGCTCCCTAATATTTACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGAt                                                                                                                            >  2:126910/1‑140 (MQ=255)

  tgttgAGGCTCCCTAATATTTACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGAt                                                                                                                            >  1:1285851/1‑140 (MQ=255)

       aGGCTCCCTAATATTTACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCtt                                                                                                                       >  1:1291285/1‑140 (MQ=255)

       aGGCTCCCTAATATTTACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCtt                                                                                                                       >  2:1121117/1‑140 (MQ=255)

            cccTAATATTTACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGAtt                                                                                                                  >  2:398152/1‑140 (MQ=255)

            cccTAATATTTACTTTAAGGGCTATACTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGAtt                                                                                                                  >  1:1748623/1‑140 (MQ=255)

              cTAATATTTACTTTAATGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGa                                                                                                                             <  2:1924419/127‑1 (MQ=255)

              cTAATATTTACTTTAATGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGa                                                                                                                             >  1:1924419/1‑127 (MQ=255)

               tAATATTTACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTa                                                                                                               <  2:631276/140‑1 (MQ=255)

                 atatTTACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTatg                                                                                                             >  1:980383/1‑140 (MQ=255)

                      tACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATgatgat                                                                                                        <  1:1493/140‑1 (MQ=255)

                      tACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATgatgat                                                                                                        <  1:266948/140‑1 (MQ=255)

                       aCTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTatgatg                                                                                                          >  2:1661805/1‑137 (MQ=255)

                       aCTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTatgatg                                                                                                          <  1:1661805/137‑1 (MQ=255)

                       aCTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGata                                                                                                       >  1:2459914/1‑140 (MQ=255)

                       aCTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGata                                                                                                       >  1:2334162/1‑140 (MQ=255)

                       aCTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGata                                                                                                       >  1:2400531/1‑140 (MQ=255)

                       aCTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGata                                                                                                       >  1:1404950/1‑140 (MQ=255)

                           tAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATgatgat                                                                                                        >  1:1595073/1‑135 (MQ=255)

                           tAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATAtttt                                                                                                   <  2:2242679/140‑1 (MQ=255)

                           tAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATAtttt                                                                                                   <  1:152669/140‑1 (MQ=255)

                              gggCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTatga                                                                                                            <  2:2078254/128‑1 (MQ=255)

                              gggCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTatga                                                                                                            >  1:2078254/1‑128 (MQ=255)

                              gggCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACa                                                                                                <  2:569164/140‑1 (MQ=255)

                                 cTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACAttc                                                                                             <  2:2400531/140‑1 (MQ=255)

                                 cTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACAttc                                                                                             >  1:1039711/1‑140 (MQ=255)

                                   atatTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTatga                                                                                                            >  2:1982734/1‑123 (MQ=255)

                                   atatTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTatga                                                                                                            <  1:1982734/123‑1 (MQ=255)

                                   atatTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACAttctt                                                                                           >  1:157252/1‑140 (MQ=255)

                                   atatTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACAttctt                                                                                           >  1:454261/1‑140 (MQ=255)

                                      ttAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCat                                                                                        <  1:632223/140‑1 (MQ=255)

                                      ttAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCat                                                                                        <  2:914331/140‑1 (MQ=255)

                                         gAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCAtatt                                                                                     >  1:1119903/1‑140 (MQ=255)

                                          aaTAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCat                                                                                        >  2:2438948/1‑136 (MQ=255)

                                          aaTAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCat                                                                                        <  2:214157/136‑1 (MQ=255)

                                          aaTAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCat                                                                                        >  1:214157/1‑136 (MQ=255)

                                           aTAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCAtattat                                                                                   <  2:36373/140‑1 (MQ=255)

                                              acacAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTAc                                                                                                 <  2:1360661/123‑1 (MQ=255)

                                              acacAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACAttctt                                                                                           >  2:3147/1‑129 (MQ=255)

                                              acacAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACAttctt                                                                                           <  1:3147/129‑1 (MQ=255)

                                              acacAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATaaa                                                                                >  2:1476681/1‑140 (MQ=255)

                                              acacAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATaaa                                                                                >  2:2186242/1‑140 (MQ=255)

                                              acacAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATaaa                                                                                >  1:2050059/1‑140 (MQ=255)

                                              acacAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATaaa                                                                                >  2:1055100/1‑140 (MQ=255)

                                              acacAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCACATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACAttct                                                                                            <  2:265411/128‑1 (MQ=255)

                                               cacaGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCat                                                                                        >  1:2448022/1‑131 (MQ=255)

                                                acaGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAg                                                                              <  2:2022074/140‑1 (MQ=255)

                                                acaGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAg                                                                              <  2:1525874/140‑1 (MQ=255)

                                                acaGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAg                                                                              <  2:720983/140‑1 (MQ=255)

                                                  aGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCa                                                                            <  2:2334162/140‑1 (MQ=255)

                                                  aGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCa                                                                            >  1:1757644/1‑140 (MQ=255)

                                                    gAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGa                                                                          >  2:2290791/1‑140 (MQ=255)

                                                      aaCAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATc                                                                        <  1:1476681/140‑1 (MQ=255)

                                                       aCAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCt                                                                       <  2:2459914/140‑1 (MQ=255)

                                                            tatGGCAACAGCATGGTATAAACAAGTTAATCCACCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTg                                                                     <  1:55247/140‑1 (MQ=255)

                                                            tatGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCa                                                                  >  1:347325/1‑140 (MQ=255)

                                                                gCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTAc                                                              >  1:1863563/1‑140 (MQ=255)

                                                                 cAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACg                                                             <  1:1055247/140‑1 (MQ=255)

                                                                   aCAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGa                                                           >  1:1351517/1‑140 (MQ=255)

                                                                   aCAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGa                                                           >  2:1079097/1‑140 (MQ=255)

                                                                       cATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATAtt                                                       <  1:817676/140‑1 (MQ=255)

                                                                          ggTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAg                                                    <  1:570253/140‑1 (MQ=255)

                                                                           gTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAgg                                                   <  2:132356/140‑1 (MQ=255)

                                                                           gTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAgg                                                   <  2:157252/140‑1 (MQ=255)

                                                                            tataAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGc                                                  <  2:278859/140‑1 (MQ=255)

                                                                            tataAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGc                                                  <  2:1748623/140‑1 (MQ=255)

                                                                              taAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTa                                                <  1:667796/140‑1 (MQ=255)

                                                                                aaCAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACt                                              <  1:2302191/140‑1 (MQ=255)

                                                                                aaCAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACt                                              <  1:1616808/140‑1 (MQ=255)

                                                                                 aCAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACtt                                             >  2:48095/1‑140 (MQ=255)

                                                                                    aGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTaa                                          >  2:2023821/1‑140 (MQ=255)

                                                                                     gTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTa                                                >  2:596500/1‑133 (MQ=255)

                                                                                     gTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTa                                                <  1:596500/133‑1 (MQ=255)

                                                                                     gTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAAt                                         >  2:2012577/1‑140 (MQ=255)

                                                                                      ttAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACt                                              <  1:430184/134‑1 (MQ=255)

                                                                                      ttAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATa                                        >  1:562003/1‑140 (MQ=255)

                                                                                      ttAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATa                                        >  2:563537/1‑140 (MQ=255)

                                                                                          t‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAgg                                                   <  1:1167193/125‑1 (MQ=255)

                                                                                          t‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGa                                    >  2:128610/1‑140 (MQ=255)

                                                                                          t‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGa                                    >  2:2300575/1‑140 (MQ=255)

                                                                                               caccacAACGGAAATCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACa                                  <  1:2270122/140‑1 (MQ=255)

                                                                                               caccacAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACa                                  >  2:83545/1‑140 (MQ=255)

                                                                                                  cacaACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTg                               <  2:445356/140‑1 (MQ=255)

                                                                                                  cacaACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTg                               >  2:1591348/1‑140 (MQ=255)

                                                                                                   acaACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTgg                              <  1:2012577/140‑1 (MQ=255)

                                                                                                       cGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTgg                              >  1:1246906/1‑136 (MQ=255)

                                                                                                       cGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTgg                              <  2:1246906/136‑1 (MQ=255)

                                                                                                       cGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCtt                          >  1:231297/1‑140 (MQ=255)

                                                                                                         gAAAGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCa                        >  2:808950/1‑140 (MQ=255)

                                                                                                          aaaGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCAt                       >  1:2200623/1‑140 (MQ=255)

                                                                                                            aGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAg                     >  2:206175/1‑140 (MQ=255)

                                                                                                            aGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAg                     >  2:626043/1‑140 (MQ=255)

                                                                                                            aGCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAg                     <  2:123720/140‑1 (MQ=255)

                                                                                                             gCTCTTTTTTCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGc                    <  2:636724/140‑1 (MQ=255)

                                                                                                                 ttttttCCGCATGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGa                <  2:231297/140‑1 (MQ=255)

                                                                                                                           aTGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGa                <  2:1698461/130‑1 (MQ=255)

                                                                                                                           aTGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGa                >  1:1698461/1‑130 (MQ=255)

                                                                                                                           aTGGCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAg      <  2:1404950/140‑1 (MQ=255)

                                                                                                                             ggCTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAggt    <  2:1018777/140‑1 (MQ=255)

                                                                                                                               cTTGGATATGCATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAg                 >  1:2163654/1‑125 (MQ=255)

ATTGTTGAGGCTCCCTAATATTTACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATATGGCAACAGCATGGTATAAACAAGTTAAT‑‑‑CCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGTATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGG  >  NC_000913/4503997‑4504260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`