New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	41 (2.120)	33 (1.720)	28/274	0.0	61.9%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
	?	NC_000913	3766087 =	0 (0.000)					coding (3905/4134 nt)	rhsA	rhs element protein RhsA

TGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362872‑3363140                                                                                                                                  |                                                                                                                                              cctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCg                                                                                                                                     <  2:265001‑M1/11‑1 (MQ=255)     ataGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaa                                                                                                                                 >  2:303128/1‑140 (MQ=255)     ataGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaa                                                                                                                                 >  1:138139/1‑140 (MQ=255)      taGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaa                                                                                                                                <  1:185573/140‑1 (MQ=255)         acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacggtcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaaaaa                                                                                                                             <  1:43096‑M1/19‑1 (MQ=255)         acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaaaaa                                                                                                                             >  1:305608‑M1/122‑140 (MQ=255)           gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑gg                                                                                                                         >  2:222830‑M1/120‑140 (MQ=255)           aTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑gg                                                                                                                         <  1:270222/140‑1 (MQ=255)            ttGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGc                                                                                                                        >  1:211140/1‑140 (MQ=255)            tcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGc                                                                                                                        <  2:309654‑M1/22‑1 (MQ=255)              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaaaa                                                                                                                             <  2:48521/135‑1 (MQ=255)              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaaaa                                                                                                                             >  1:48521/1‑135 (MQ=255)              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCaa                                                                                                                      >  2:296369/1‑140 (MQ=255)              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCaa                                                                                                                      >  1:52710/1‑140 (MQ=255)              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCaa                                                                                                                      >  1:62611/1‑140 (MQ=255)              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCaa                                                                                                                      >  2:138310/1‑140 (MQ=255)                    gTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑gg                                                                                                                         >  2:65432/1‑131 (MQ=255)                    gTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑gg                                                                                                                         <  1:65432/131‑1 (MQ=255)                     ttGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCG‑TTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTa                                                                                                              >  2:56655/1‑140 (MQ=255)                       gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACa                                                                                                                    <  1:148306‑M1/26‑1 (MQ=255)                       gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACa                                                                                                                    >  2:148306‑M1/108‑133 (MQ=255)                          tttGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTAcgcg                                                                                                          <  1:124487/140‑1 (MQ=255)                                          cagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGc                                                                                          <  1:223151‑M1/52‑1 (MQ=255)                                               tCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:211140/140‑1 (MQ=255)                                                 tgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAttt                                                                                   <  2:183516‑M1/59‑1 (MQ=255)                                                  gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAtt                                                                                    <  2:86117‑M1/60‑1 (MQ=255)                                                   tAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGt                                                                                 <  1:138310/140‑1 (MQ=255)                                                       ttattatgttattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTg                                                                             <  1:17083‑M1/65‑1 (MQ=255)                                                          ttatgttattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATc                                                                          >  2:17083‑M1/73‑140 (MQ=255)                                                          aGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATc                                                                          >  1:5721/1‑140 (MQ=255)                                                           tatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCa                                                                         >  1:183516‑M1/72‑140 (MQ=255)                                                             tCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       <  1:303128/140‑1 (MQ=255)                                                             tCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       <  1:296369/140‑1 (MQ=255)                                                               tcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCa                                                                     <  1:23250‑M1/73‑1 (MQ=255)                                                                tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  1:37230/1‑140 (MQ=255)                                                                       tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGca                                                             >  2:286668/1‑140 (MQ=255)                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGTTAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:74321/1‑140 (MQ=255)                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:80436/1‑140 (MQ=255)                                                                          cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  1:64690/1‑140 (MQ=255)                                                                          cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  2:188274/1‑140 (MQ=255)                                                                            ttattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAg                                                        <  1:224983/140‑1 (MQ=255)                                                                                     ctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaa                                               <  2:276250‑M1/95‑1 (MQ=255)                                                                                       gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:19743‑M1/97‑1 (MQ=255)                                                                                         tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  1:102087/1‑140 (MQ=255)                                                                                            tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  1:323858‑M1/102‑1 (MQ=255)                                                                                              cccgtttttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      <  1:56655/136‑1 (MQ=255)                                                                                               aacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTc                                     <  1:138067‑M1/105‑1 (MQ=255)                                                                                                    ttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  1:280385‑M1/110‑1 (MQ=255)                                                                                                     tccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaaga                               <  1:285986‑M1/111‑1 (MQ=255)                                                                                                             tGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       <  2:102087/140‑1 (MQ=255)                                                                                                             tGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       >  2:312494/1‑140 (MQ=255)                                                                                                              agctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      <  1:124194‑M1/120‑1 (MQ=255)                                                                                                                  atcattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  2:23250‑M1/17‑140 (MQ=255)                                                                                                                   ttCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGtt                 <  2:64690/140‑1 (MQ=255)                                                                                                                    tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:312494/140‑1 (MQ=255)                                                                                                                    tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:5721/140‑1 (MQ=255)                                                                                                                    tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:37230/140‑1 (MQ=255)                                                                                                                    cattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATTGCTGTTa                >  1:136829‑M1/15‑140 (MQ=255)                                                                                                                    cattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:285986‑M1/15‑140 (MQ=255)                                                                                                                    cattgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:309654‑M1/15‑140 (MQ=255)                                                                                                                    cattgttatatctaAGTAAATCGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATTGCTGTTa                >  1:301593‑M1/15‑140 (MQ=255)                                                                                                                      aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:100497/1‑140 (MQ=255)                                                                                                                      aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:191315/1‑140 (MQ=255)                                                                                                                       tgttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  2:138067‑M1/12‑140 (MQ=255)                                                                                                                        gttatatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            <  2:3938‑M1/130‑1 (MQ=255)                                                                                                                        ggATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            <  2:34947/139‑1 (MQ=255)                                                                                                                           atatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  1:1981‑M1/133‑1 (MQ=255)                                                                                                                           atatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  1:148293‑M1/133‑1 (MQ=255)                                                                                                                           atatctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  1:178471‑M1/133‑1 (MQ=255)                                                                                                                             atctaAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  2:196141‑M1/135‑1 (MQ=255)                                                                                                                              tATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:286668/140‑1 (MQ=255)                                                                                                                              tATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:74321/140‑1 (MQ=255)                                                                                                                              tATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:188274/140‑1 (MQ=255)                                                                                                                                 aAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:68627‑M1/139‑1 (MQ=255)                                                                                                                                  AGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:147100‑M1/140‑1 (MQ=255)                                                                                                                                  |                                                                                                                                              TGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362872‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.