BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	19 (0.120)	111 (0.810)	63/244	0.5	88.5%	coding (305/630 nt)	ycfK	e14 prophage; protein StfP
*	?	NC_000913	= 1209602	12 (0.090)	111 (0.810)	63/244	0.5	88.5%	pseudogene (54/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment

Only 100 of 133 total aligned reads displayed.

GCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209466‑1209741

gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGcct                                                                                                                                          >  2:812306‑M2/1‑137 (MQ=255)

gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGcct                                                                                                                                          <  2:774662‑M2/140‑4 (MQ=255)

 cAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGcctt                                                                                                                                         <  1:2156752‑M2/140‑5 (MQ=255)

    tttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCAGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc                                                                                                                                      >  1:2523904‑M2/1‑133 (MQ=255)

     ttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc                                                                                                                                     >  1:107779‑M2/1‑132 (MQ=255)

      tatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccc                                                                                                                                    >  1:2242715‑M2/1‑131 (MQ=255)

          tGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaac                                                                                                                                >  2:379941‑M2/1‑127 (MQ=255)

           gTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaac                                                                                                                                >  1:2618633‑M2/1‑127 (MQ=255)

              ggATAAGCCTTTGCCAGTTCCGGGTACTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag                                                                                                                            <  2:2405291‑M2/140‑18 (MQ=255)

                        ttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                  >  2:141503‑M2/1‑113 (MQ=255)

                        ttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                  >  1:2018540‑M2/1‑113 (MQ=255)

                         tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                                                                                 <  1:992954‑M2/140‑29 (MQ=255)

                         tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                                                                                 <  1:904519‑M2/140‑29 (MQ=255)

                         tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                                                                                 <  2:259824‑M2/140‑29 (MQ=255)

                             aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGATACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgt                                                                                                             >  2:1738459‑M2/1‑108 (MQ=255)

                             aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgt                                                                                                             >  1:614438‑M2/1‑108 (MQ=255)

                               ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACGCCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt                                                                                                           <  2:391020‑M2/140‑35 (MQ=255)

                               ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt                                                                                                           <  2:2620296‑M2/140‑35 (MQ=255)

                               ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt                                                                                                           <  2:233039‑M2/140‑35 (MQ=255)

                               ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                  >  2:147569‑M2/1‑106 (MQ=255)

                               ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                  <  1:147569‑M2/133‑28 (MQ=255)

                                   gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac                                                                                                       >  2:1145730‑M2/1‑102 (MQ=255)

                                    ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca                                                                                                      >  1:855406‑M2/1‑101 (MQ=255)

                                    ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca                                                                                                      <  2:2048261‑M2/140‑40 (MQ=255)

                                    ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca                                                                                                      >  2:260531‑M2/1‑101 (MQ=255)

                                         tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcc                                                                                                 <  1:276691‑M2/140‑45 (MQ=255)

                                          cttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcca                                                                                                >  1:774662‑M2/1‑95 (MQ=255)

                                          cttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcca                                                                                                >  1:741638‑M2/1‑95 (MQ=255)

                                          cttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcca                                                                                                >  1:345133‑M2/1‑95 (MQ=255)

                                          cttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcca                                                                                                >  1:345148‑M2/1‑95 (MQ=255)

                                           ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat                                                                                               >  2:458590‑M2/1‑94 (MQ=255)

                                           ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat                                                                                               <  2:1549849‑M2/140‑47 (MQ=255)

                                           ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCA‑AAGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtttgcgagagccgtttgcacagtgccat                                                                                               >  2:712660‑M2/1‑94 (MQ=255)

                                                   aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg                                                                                       <  1:1500005‑M2/140‑55 (MQ=255)

                                                   aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg                                                                                       <  1:1026720‑M2/140‑55 (MQ=255)

                                                   aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg                                                                                       <  2:180400‑M2/140‑55 (MQ=255)

                                                      aaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACGCCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgata                                                                                    >  1:391020‑M2/1‑83 (MQ=255)

                                                      aaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgata                                                                                    >  1:2048261‑M2/1‑83 (MQ=255)

                                                         cGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg                                                                                 >  1:2493494‑M2/1‑80 (MQ=255)

                                                             aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa                                                                             <  1:68181‑M2/140‑65 (MQ=255)

                                                                 ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgg                                                                         >  2:276691‑M2/1‑72 (MQ=255)

                                                                 ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgg                                                                         <  1:1527129‑M2/140‑69 (MQ=255)

                                                                  tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgga                                                                        >  1:753056‑M2/1‑71 (MQ=255)

                                                                        tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttg                                                                  >  1:2620296‑M2/1‑65 (MQ=255)

                                                                        tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttg                                                                  >  1:2538398‑M2/1‑65 (MQ=255)

                                                                         cagccagcCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc                                                                 <  1:498164‑M2/140‑77 (MQ=255)

                                                                         cagccagcCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc                                                                 <  2:2568607‑M2/140‑77 (MQ=255)

                                                                         cagccagcCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc                                                                 <  1:1944477‑M2/140‑77 (MQ=255)

                                                                              agccTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctt                                                            <  2:992257‑M2/140‑82 (MQ=255)

                                                                              agccTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctt                                                            <  1:987490‑M2/140‑82 (MQ=255)

                                                                              agccTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctt                                                            <  1:806491‑M2/140‑82 (MQ=255)

                                                                                ccTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaa                                                          <  1:1611159‑M2/140‑84 (MQ=255)

                                                                                    ttGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagc                                                      <  2:1156566‑M2/140‑88 (MQ=255)

                                                                                      ggCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcag                                                    >  2:1394532‑M2/1‑51 (MQ=255)

                                                                                       gCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAt                                                   <  2:1779091/140‑1 (MQ=255)

                                                                                         ggAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgc                                                 >  2:775238‑M2/1‑48 (MQ=255)

                                                                                          gAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                <  1:1133804/140‑1 (MQ=255)

                                                                                           aGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgc                                               <  1:654134‑M2/140‑95 (MQ=255)

                                                                                           aGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgc                                               >  2:2482100‑M2/1‑46 (MQ=255)

                                                                                             tGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttcttccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcga                                             <  1:902462‑M2/140‑97 (MQ=255)

                                                                                             tGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcga                                             >  1:2617975‑M2/1‑44 (MQ=255)

                                                                                             tGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcga                                             >  2:551672‑M2/1‑44 (MQ=255)

                                                                                                 tGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtg                                         >  1:834109‑M2/1‑40 (MQ=255)

                                                                                                 tGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa                                         <  2:695792/140‑1 (MQ=255)

                                                                                                   aaGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg                                       >  2:68181‑M2/1‑38 (MQ=255)

                                                                                                     ggCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                     >  2:1527129‑M2/1‑36 (MQ=255)

                                                                                                        c‑ACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaag                                  >  2:1944477‑M2/1‑33 (MQ=255)

                                                                                                          aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagt                                 <  2:1536436‑M2/140‑109 (MQ=255)

                                                                                                          aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                     >  1:2020542‑M2/1‑32 (MQ=255)

                                                                                                          aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                     <  2:2020542‑M2/136‑105 (MQ=255)

                                                                                                           cGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagta                                <  1:1533170‑M2/140‑110 (MQ=255)

                                                                                                           cGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagta                                >  1:1157243‑M2/1‑31 (MQ=255)

                                                                                                           cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGATATGTACGCGTATca                                >  1:78243/1‑140 (MQ=255)

                                                                                                                 cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                          <  2:20694/140‑1 (MQ=255)

                                                                                                                   ggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcg                        <  2:754137‑M2/140‑118 (MQ=255)

                                                                                                                      cacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgc                     <  1:1028353‑M2/140‑121 (MQ=255)

                                                                                                                      cacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                     <  1:14033‑M2/124‑105 (MQ=255)

                                                                                                                       acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgcc                    >  1:180400‑M2/1‑19 (MQ=255)

                                                                                                                           aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc                >  2:1314091‑M2/1‑15 (MQ=255)

                                                                                                                           aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc                >  1:1156566‑M2/1‑15 (MQ=255)

                                                                                                                           aCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc                >  2:1178159‑M2/1‑15 (MQ=255)

                                                                                                                                tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttct           <  2:132763‑M2/140‑131 (MQ=255)

                                                                                                                                 aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctc          <  1:2242348‑M2/140‑132 (MQ=255)

                                                                                                                                   tGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca        <  1:1865013‑M2/140‑134 (MQ=255)

                                                                                                                                   tGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca        <  1:175442‑M2/140‑134 (MQ=255)

                                                                                                                                   tGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctc          >  2:1487931‑M2/1‑7 (MQ=255)

                                                                                                                                   tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTa        >  1:1959931/1‑140 (MQ=255)

                                                                                                                                     cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg      >  1:406670‑M2/1‑5 (MQ=255)

                                                                                                                                     cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg      <  1:936532‑M2/140‑136 (MQ=255)

                                                                                                                                     cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg      >  1:1822196‑M2/1‑5 (MQ=255)

                                                                                                                                      agggccttctcccaaaccaaggttttcgagagccgtttgcccagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggc     >  2:88143‑M2/1‑4 (MQ=255)

                                                                                                                                       gagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggct    <  1:1396159‑M2/140‑138 (MQ=255)

                                                                                                                                        agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtcagtaactggtcgtgccgccccttctccaggctg   <  2:1668768‑M2/140‑139 (MQ=255)

                                                                                                                                        agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctg   <  2:370578‑M2/140‑139 (MQ=255)

                                                                                                                                         gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg  <  1:1077597‑M2/140‑140 (MQ=255)

                                                                                                                                         gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg  <  1:1917746‑M2/140‑140 (MQ=255)

                                                                                                                                         gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg      >  2:1657903‑M2/1‑1 (MQ=255)

                                                                                                                                         gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg      <  1:1657903‑M2/136‑136 (MQ=255)

                                                                                                                                         gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGt  >  2:2186736/1‑140 (MQ=255)

                                                                                                                                         gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGt  >  2:2283864/1‑140 (MQ=255)

GCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCC‑ACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209466‑1209741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.