| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 557,845 | G→T | intergenic (‑104/‑367) | folD ← / → sfmA | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase/putative fimbrial protein SfmA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 557,845 | 0 | G | T | 98.9% | 628.4 / ‑6.2 | 180 | intergenic (‑104/‑367) | folD/sfmA | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase/putative fimbrial protein SfmA |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (96/82); total (97/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 185 total aligned reads displayed.
CAATCGTTTTACCGTCAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCGACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAATTTAAGAAATACCTGACAATAT > NC_000913/557708‑557980 | cAATCGTTTTACCGTCAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTAc > 2:2448889/1‑140 (MQ=255) aTCGTTTTACCGTCAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACct > 1:538825/1‑140 (MQ=255) aTCGTTTTACCGTCAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACct > 2:287544/1‑140 (MQ=255) aTCGTTTTACCGTCAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACct > 1:320649/1‑140 (MQ=255) aTCGTTTTACCGTCAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACct > 2:332112/1‑140 (MQ=255) cGTCAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAgg < 2:993424/140‑1 (MQ=255) tCAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTg < 2:1378966/140‑1 (MQ=255) cAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGa > 2:86401/1‑140 (MQ=255) ataatCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAgg > 2:2137756/1‑140 (MQ=255) aatCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGgcg < 1:2152895/140‑1 (MQ=255) tCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCa < 2:1015821/140‑1 (MQ=255) tttGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCAcc < 2:84324/140‑1 (MQ=255) tgctgcCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGt > 2:2078261/1‑140 (MQ=255) tgctgcCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGt < 1:1786277/140‑1 (MQ=255) ctgcCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCg > 2:669334/1‑140 (MQ=255) gcCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCt < 2:878767/140‑1 (MQ=255) ccATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTg < 2:2499515/140‑1 (MQ=255) ccATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTg < 2:2547621/140‑1 (MQ=255) agagagagGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACt > 1:1937918/1‑140 (MQ=255) agagagagGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACt < 1:2078261/140‑1 (MQ=255) agagagGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGa > 2:1687497/1‑140 (MQ=255) gagagGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGaa < 1:2513349/140‑1 (MQ=255) gagGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAg > 2:1993731/1‑140 (MQ=255) agGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGc > 1:1728418/1‑140 (MQ=255) ggATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCt > 2:2599941/1‑140 (MQ=255) ggATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCt > 1:502817/1‑140 (MQ=255) gATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCtt > 2:2244279/1‑140 (MQ=255) gATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCtt > 2:767844/1‑140 (MQ=255) ttCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCa > 2:2350408/1‑140 (MQ=255) tCCATCTGTTACGTAGGTCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCAt > 2:1273291/1‑140 (MQ=255) tCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCAt > 1:322104/1‑140 (MQ=255) tCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCAt > 2:1542661/1‑140 (MQ=255) aTCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCAtttt < 1:383197/140‑1 (MQ=255) gTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGt > 1:39540/1‑140 (MQ=255) ttACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTc < 2:320649/140‑1 (MQ=255) ttACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTc < 1:669334/140‑1 (MQ=255) aCGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCa > 2:2538526/1‑140 (MQ=255) aCGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCa > 1:2203185/1‑140 (MQ=255) tAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCatga > 2:1466870/1‑140 (MQ=255) tAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCatga > 2:513800/1‑140 (MQ=255) aGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCatgat > 1:628120/1‑140 (MQ=255) aaTCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCatgatg < 1:867941/139‑1 (MQ=255) aTCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTc < 2:1527303/122‑1 (MQ=255) aTCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTc > 1:1527303/1‑122 (MQ=255) aTCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATgg > 1:237704/1‑140 (MQ=255) aTCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATgg < 2:834818/140‑1 (MQ=255) aTCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATgg > 2:1753575/1‑140 (MQ=255) aTCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATgg > 1:725435/1‑140 (MQ=255) aTCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGGGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATgg > 2:633575/1‑140 (MQ=255) cGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCg > 1:2353252/1‑140 (MQ=255) cGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCg > 1:2382602/1‑140 (MQ=255) cGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCg > 1:1434181/1‑140 (MQ=255) aGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTg > 2:1618237/1‑140 (MQ=255) aGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTg > 2:1130868/1‑140 (MQ=255) ggggATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGt < 1:1159801/140‑1 (MQ=255) aTGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAAt > 1:2321718/1‑140 (MQ=255) aTGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAAt > 1:1994449/1‑140 (MQ=255) aTGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAAt > 1:1816697/1‑140 (MQ=255) aTGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAAt > 2:1855939/1‑140 (MQ=255) tGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATc > 2:149835/1‑140 (MQ=255) tGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATc < 2:502817/140‑1 (MQ=255) ccTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGa > 1:2497949/1‑140 (MQ=255) ccTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGa > 1:958740/1‑140 (MQ=255) ccTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGa > 1:1112619/1‑140 (MQ=255) tATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAAc < 2:1180783/140‑1 (MQ=255) aTTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACt > 2:2159320/1‑140 (MQ=255) aTTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACt < 2:2203185/140‑1 (MQ=255) ttttGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTg < 2:735755/140‑1 (MQ=255) ttGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGat < 2:39540/140‑1 (MQ=255) gTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGattt > 2:712835/1‑140 (MQ=255) tCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGattta < 1:1273291/140‑1 (MQ=255) aGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc < 1:149835/140‑1 (MQ=255) aGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc < 1:1718377/140‑1 (MQ=255) aGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc < 1:1753575/140‑1 (MQ=255) aGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc < 1:2244279/140‑1 (MQ=255) aGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc < 1:1120047/140‑1 (MQ=255) aGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc > 2:2337488/1‑140 (MQ=255) aGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc < 1:513800/140‑1 (MQ=255) aGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc > 1:608065/1‑140 (MQ=255) gggCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc < 1:233883/136‑1 (MQ=255) gggCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc > 2:233883/1‑136 (MQ=255) gggCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTc > 1:2272127/1‑135 (MQ=255) gcgcgcTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCt < 1:2240256/140‑1 (MQ=255) cgcgcTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTa < 2:1332919/140‑1 (MQ=255) cgcgcTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTa < 1:835909/140‑1 (MQ=255) cgcTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTcc > 1:1579187/1‑131 (MQ=255) cTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGa < 2:1728418/140‑1 (MQ=255) aGGTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAg < 2:1937918/140‑1 (MQ=255) ggTTTCGTTTCAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGa < 2:538825/140‑1 (MQ=255) cgtttcAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTa > 2:574542/1‑125 (MQ=255) cgtttcAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTa < 1:574542/125‑1 (MQ=255) cgtttcAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAAtt < 1:86401/140‑1 (MQ=255) tttcAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGa > 1:1498235/1‑133 (MQ=255) tttcAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAATTTa > 1:1306549/1‑140 (MQ=255) tttcAGATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAATTTa > 1:273916/1‑140 (MQ=255) gATTTATCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAATTTAAGaaa < 2:237704/140‑1 (MQ=255) tCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAATTTAAGAAATACCTg < 1:821273/140‑1 (MQ=255) tCGCGTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAATTTAAGAAATACCTg > 2:1265845/1‑140 (MQ=255) gcgTGAAGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAATTTAAGAAATACCTGAc > 1:787930/1‑140 (MQ=255) aaGCTACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAATTTAAGAAATACCTGACAatat > 2:2033308/1‑140 (MQ=255) | CAATCGTTTTACCGTCAATAATCTTTGCTGCCATCAGAGAGAGGATTCCATCTGTTACGTAGATCGAAGGGGATGCGCCTATTTTGTCAGAAGCGGGGCGCGCTGTCAGGTTTCGTTTCAGATTTATCGCGTGAAGCGACCTCTTGCGAAGGTGAGGCGCACCGTCGCTGAGACTGAAAGCTTCATTTTTCGTCCATGATGGCGTTGTAAATCTGGAACTGATTTATTTCCTTGTCTAAGGATTAAGATAATTTAAGAAATACCTGACAATAT > NC_000913/557708‑557980 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |