Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,101,5140GT28.2% 200.1 / 38.3 78intergenic (+84/‑176)sodA/kdgTsuperoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base G (2/54);  new base T (22/0);  total (24/54)
Fisher's exact test for biased strand distribution p-value = 1.95e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG  >  NC_000913/4101375‑4101646
                                                                                                                                           |                                                                                                                                     
tCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTtg                                                                                                                                       <  1:2127112/140‑1 (MQ=255)
    gAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTtgtg                                                                                                                                     >  2:924684/1‑138 (MQ=255)
    gAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTtgtg                                                                                                                                     <  1:924684/138‑1 (MQ=255)
    gAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAt                                                                                                                                   <  2:1888959/140‑1 (MQ=255)
         tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGCGGGTTTTTTTTGTTCAAtt                                                                                                                              >  2:1895092/1‑140 (MQ=255)
           gtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTc                                                                                                                            <  2:1857421/140‑1 (MQ=255)
            tgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGGTCAAtttta                                                                                                                           >  2:1088443/1‑138 (MQ=255)
            tgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGA‑GCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTCaa                                                                                                                          >  1:1149714/1‑140 (MQ=255)
              aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTCaaa                                                                                                                         >  1:1504747/1‑140 (MQ=255)
                cTGGGACGAAGAAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAAt                                                                                                                       <  1:358381/140‑1 (MQ=255)
                   gagacaggcagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATaaa                                                                                                                    <  1:326965/133‑1 (MQ=255)
                       gAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACa                                                                                                                <  1:1283683/140‑1 (MQ=255)
                        aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTCAAAATaaa                                                                                                                    >  1:678241/1‑135 (MQ=255)
                        aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTCAAAATAAAAACaa                                                                                                               >  1:76178/1‑140 (MQ=255)
                        aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATaaa                                                                                                                    <  2:678241/135‑1 (MQ=255)
                         agcagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTCAAAATAAAAACaaa                                                                                                              >  1:776092/1‑139 (MQ=255)
                            agcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGAt                                                                                                           <  1:2039847/140‑1 (MQ=255)
                                 cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                      <  2:1714465/140‑1 (MQ=255)
                                 cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                      <  2:305891/140‑1 (MQ=255)
                                 cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                      <  2:1938731/140‑1 (MQ=255)
                                 cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                      <  2:1026385/140‑1 (MQ=255)
                                   cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAAATTTAAAAAAAAAACAAAGATCCGataa                                                                                                    >  2:1603225/1‑140 (MQ=255)
                                   cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGataa                                                                                                    <  1:901843/140‑1 (MQ=255)
                                   cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAAAGATCCGataa                                                                                                    >  2:1994590/1‑140 (MQ=255)
                                   cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAAAAAAAAAAAAAATCCGataa                                                                                                    >  2:1636687/1‑140 (MQ=255)
                                     ttttGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGataaaa                                                                                                  <  1:1088443/140‑1 (MQ=255)
                                     ttttGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGTTTTTTTTTGATCAATTTTAAAATAAAAAAAATGATccctgtttc                                                                                                  >  2:326965/1‑133 (MQ=255)
                                          cggcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATTAATTTTAAAAAAAAAAAAATAATCCGataaaaaaaaa                                                                                             >  2:1710626/1‑140 (MQ=255)
                                           ggcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCGGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGataaaaataaaa                                                                                            <  1:1852627/140‑1 (MQ=255)
                                            gcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAAc                                                                                           <  1:1901804/140‑1 (MQ=255)
                                              gAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAg                                                                                         <  1:976961/140‑1 (MQ=255)
                                              cgaaaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAg                                                                                         <  2:991508/138‑1 (MQ=255)
                                                 aaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt                                                                                      <  1:1994590/140‑1 (MQ=255)
                                                  aaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGtt                                                                                     <  2:1504747/140‑1 (MQ=255)
                                                       atCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAAt                                                                                <  1:1007083/140‑1 (MQ=255)
                                                       atCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAAt                                                                                <  1:685663/140‑1 (MQ=255)
                                                            ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑tg                                                                          <  1:1006426/140‑1 (MQ=255)
                                                            ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑tg                                                                          <  1:2149288/140‑1 (MQ=255)
                                                            ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATTAATTTTCAAATAAAAACAATGATCCGGTAAAAAAAAAAAAGCGTTTTAAtttttt                                                                           >  2:1006426/1‑136 (MQ=255)
                                                               ccgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTgg                                                                       <  2:581225/140‑1 (MQ=255)
                                                                   ctgctgCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTCAAAATAAAAAAAATGATCCGATAAAAATAAAAAAGCGTTTCAATTGA‑TGTGGgttt                                                                   >  2:1169960/1‑140 (MQ=255)
                                                                      ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGAt                                                                <  2:46995/140‑1 (MQ=255)
                                                                      ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGAt                                                                <  2:39894/140‑1 (MQ=255)
                                                                      ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGAt                                                                <  1:489857/140‑1 (MQ=255)
                                                                        gcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCa                                                              <  1:1710626/140‑1 (MQ=255)
                                                                         cAATGAGGCGTATAGGCCGCATATCAGCTT‑AAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACt                                                            <  1:1624891/140‑1 (MQ=255)
                                                                             gAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGATCAATTTCAAAATAAAAAAAAAGATCCGATAAAAATAAAAAAGCGCTTCAATTTT‑TGTGGTTTTTATCACtttt                                                         >  2:1826278/1‑140 (MQ=255)
                                                                              aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTa                                                        <  2:1479339/140‑1 (MQ=255)
                                                                              aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTa                                                        <  1:1169960/140‑1 (MQ=255)
                                                                              aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTa                                                        <  2:896008/140‑1 (MQ=255)
                                                                                 cGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAAATTTAAAATAAAAAAAAAGATCCGATAAAAATAAAAAAACGTTTTTATTGA‑TGTGGGTTTGTTCACTttttttt                                                     >  2:914583/1‑139 (MQ=255)
                                                                                 cGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGGTTAATTTTTAAATAAAAAAAATGATCCGATAAAAAAAAAACAACGTTTTAATTTA‑TGTGGTTTTTATTACTttttttt                                                     >  2:398495/1‑139 (MQ=255)
                                                                                   tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTTAAAATAAAAAAAAAGATCCGATAAAAATAAAAAAGCGGTTCAATTTA‑TGTGGTTTTTTTCACTTttatttat                                                   >  2:1135019/1‑140 (MQ=255)
                                                                                   tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGAACACTTTTATTGAt                                                   <  1:784376/140‑1 (MQ=255)
                                                                                   tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAATGATCCGATAAAAATAAAAAAGCGTTTCAATTGA‑TGTGGGTTTTATCACTTTTTTTTAt                                                   >  1:1034252/1‑140 (MQ=255)
                                                                                   tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTCAAAAAAAAAAAAAAGATCCGATAAAAATAAAACAGCGTTTTAATTGA‑TGTGGGTTTGATCACTTTTTTTTAt                                                   >  2:1661382/1‑140 (MQ=255)
                                                                                      aGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTaa                                                <  2:1149714/140‑1 (MQ=255)
                                                                                       ggCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTaaa                                               <  1:1636687/140‑1 (MQ=255)
                                                                                       ggCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTaaa                                               <  2:1897314/140‑1 (MQ=255)
                                                                                        gCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAaat                                              <  1:754986/140‑1 (MQ=255)
                                                                                          cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTTTTGATTAaatga                                            >  1:778095/1‑140 (MQ=255)
                                                                                           gCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTa                                                        >  1:1888871/1‑127 (MQ=255)
                                                                                           gCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTa                                                        <  2:1888871/127‑1 (MQ=255)
                                                                                           gCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAAAAAAAACAATGATCCGATAAAAAAAAAAAAGCGTTTTAATTTA‑TGTGGGTTTGATTACTTTTTTTGATTAaatgaa                                           >  2:1163868/1‑140 (MQ=255)
                                                                                            cATATCAGCTTAAAATATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGGTCAATTTTAAAATAAAAAAAAAGATCCGATAAAAATAAAACAGCGTTTTAATTGA‑TGTGGGTTTGATCACTTTTTTTTATTAaatgaat                                          >  2:1232827/1‑140 (MQ=255)
                                                                                            cATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGGTCAATTTTAAAATAAAAAAAAAAATCCGATAAAAAAAAAAAAACGTTTTAATTTA‑TGTGGGTTTTTTTACTTTTTTTTATTTaatgaat                                          >  2:540089/1‑140 (MQ=255)
                                                                                             atatCAGCTTAAAAAATGACCCATCGCCAACGGCGGGGGCTTTTTTTTGATCAAATTGCAAATTAAAAAAATAAACCGCTCAAAATAACACATCGGTTTGCTTGATTTTCGTTTTGA‑CACTTTTATTTATTAaatgagtg                                         >  2:1900679/1‑140 (MQ=255)
                                                                                                      tAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTTAAAAAAAAAAAAATGATCCGATAAAAAAAAAAAAGCGGTTCAATTGA‑TGTGGGTTTGATCACTTTTATTGATTAAATAAATGTCTATCTTc                                >  1:257011/1‑140 (MQ=255)
                                                                                                         aataTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                             <  1:1232827/137‑1 (MQ=255)
                                                                                                         aaaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                             <  1:432557/140‑1 (MQ=255)
                                                                                                         aaaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                             <  2:1293753/140‑1 (MQ=255)
                                                                                                         aaaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                             <  1:1802969/140‑1 (MQ=255)
                                                                                                         aaaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                             <  2:76178/140‑1 (MQ=255)
                                                                                                         aaaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                             <  2:722599/140‑1 (MQ=255)
                                                                                                            aTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTcc                          <  2:1034252/140‑1 (MQ=255)
                                                                                                            aTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTcc                          <  1:920986/140‑1 (MQ=255)
                                                                                                              gAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCAt                        <  1:1603225/140‑1 (MQ=255)
                                                                                                              gAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCAt                        <  1:1163868/140‑1 (MQ=255)
                                                                                                              gAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAAATTTAAAATAAAAAAAATGATCCGATAAAAAAAAAAAAGCGTTTTAATTGA‑TGTGGGTTTGATCACTTTTATTGATTAAATGAATGTTTATCTTCGTTTTCAt                        >  2:934101/1‑140 (MQ=255)
                                                                                                                    acGCCAAAGGCCGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAacac                  <  2:2085747/139‑1 (MQ=255)
                                                                                                                      gCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTg                <  2:776092/140‑1 (MQ=255)
                                                                                                                         aaCGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg             <  1:763619/140‑1 (MQ=255)
                                                                                                                           cggcggTGGTTTTTTTTTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAAAAACGTTTCAATTTA‑TGTGGGTTTTATCACTTTTATTTATTAAAAGAATGTCTATCTTCGTTTCCATCAACACTGATGCt           >  2:1014645/1‑140 (MQ=255)
                                                                                                                            ggcggTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTc          <  1:1826278/140‑1 (MQ=255)
                                                                                                                              cggTGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCa        >  2:609746/1‑140 (MQ=255)
                                                                                                                                gtggtTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCAtt      <  1:934101/140‑1 (MQ=255)
                                                                                                                                    tttttttGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAgg  <  1:540089/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                     
TCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGA‑TGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG  >  NC_000913/4101375‑4101646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑