BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,788,446	A→G	pseudogene (2050/2253 nt)	ygaQ →	putative uncharacterized protein YgaQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,788,446	0	A	G	100.0%	529.3 / NA	141	pseudogene (2050/2253 nt)	ygaQ	putative uncharacterized protein YgaQ
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (61/80); total (61/80)

Only 100 of 141 total aligned reads displayed.

GAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTACCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAAT  >  NC_000913/2788309‑2788577

gAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGcc                                                                                                                                   <  1:1071641/140‑1 (MQ=255)

gAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGcc                                                                                                                                   <  1:1223587/140‑1 (MQ=255)

gAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGcc                                                                                                                                   >  2:2146070/1‑140 (MQ=255)

gAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGcc                                                                                                                                   >  1:277964/1‑140 (MQ=255)

 aaTATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCt                                                                                                                                  >  1:330319/1‑140 (MQ=255)

     tGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGcc                                                                                                                              >  1:1865201/1‑140 (MQ=255)

     tGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGcc                                                                                                                              >  1:2098864/1‑140 (MQ=255)

     tGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGcc                                                                                                                              >  2:590155/1‑140 (MQ=255)

       gAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTa                                                                                                                            >  2:1092658/1‑140 (MQ=255)

          cgcATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACa                                                                                                                         >  2:2046964/1‑140 (MQ=255)

          cgcATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACa                                                                                                                         >  1:1867710/1‑140 (MQ=255)

            cATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACaaa                                                                                                                       >  1:66423/1‑140 (MQ=255)

            cATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACaaa                                                                                                                       >  1:1572027/1‑140 (MQ=255)

              tttGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAAtt                                                                                                                     <  1:1932382/140‑1 (MQ=255)

               ttGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTg                                                                                                                    <  1:1464986/140‑1 (MQ=255)

               ttGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTg                                                                                                                    <  2:1970015/140‑1 (MQ=255)

               ttGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTg                                                                                                                    <  1:353318/140‑1 (MQ=255)

               ttGAGGGTGTATCTGCAACTAAAAACGTTCAGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTg                                                                                                                    <  2:1715945/140‑1 (MQ=255)

                   gggTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAAc                                                                                                                <  2:1572027/140‑1 (MQ=255)

                   gggTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAAc                                                                                                                <  1:1916963/140‑1 (MQ=255)

                      tgtATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTg                                                                                                             <  2:2098864/140‑1 (MQ=255)

                        tATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAAc                                                                                                                >  2:1181474/1‑135 (MQ=255)

                        tATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGa                                                                                                           <  2:1867710/140‑1 (MQ=255)

                        tATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGa                                                                                                           <  1:689163/140‑1 (MQ=255)

                                aCTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACaa                                                                                                   >  2:1048569/1‑140 (MQ=255)

                                aCTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACa                                                                                                    <  2:372286/139‑1 (MQ=255)

                                aCTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACa                                                                                                    >  1:372286/1‑139 (MQ=255)

                                       aCGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATg                                                                                            <  1:2148069/140‑1 (MQ=255)

                                       aCGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATg                                                                                            <  2:1865201/140‑1 (MQ=255)

                                       aCGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATg                                                                                            <  2:26154/140‑1 (MQ=255)

                                       aCGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGCTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATg                                                                                            <  2:133057/140‑1 (MQ=255)

                                        cGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATgg                                                                                           <  1:1158582/140‑1 (MQ=255)

                                         gTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATggg                                                                                          <  1:2046964/140‑1 (MQ=255)

                                         gTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATggg                                                                                          <  2:519534/140‑1 (MQ=255)

                                         gTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATggg                                                                                          <  1:1494559/140‑1 (MQ=255)

                                         gTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATggg                                                                                          <  2:202910/140‑1 (MQ=255)

                                         gTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATggg                                                                                          >  1:332541/1‑140 (MQ=255)

                                               gCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTaa                                                                                    <  1:105381/140‑1 (MQ=255)

                                               gCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTaa                                                                                    <  2:332541/140‑1 (MQ=255)

                                               gCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCATGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTaa                                                                                    <  2:962505/140‑1 (MQ=255)

                                                    tAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCg                                                                               >  2:307219/1‑140 (MQ=255)

                                                     aGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGt                                                                              <  1:1758429/140‑1 (MQ=255)

                                                     aGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGt                                                                              <  1:595206/140‑1 (MQ=255)

                                                      gTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGtt                                                                             <  1:1605507/140‑1 (MQ=255)

                                                      gTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGtt                                                                             <  1:756408/140‑1 (MQ=255)

                                                          tGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTaa                                                                                    <  1:131959/129‑1 (MQ=255)

                                                          tGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACa                                                                         <  2:330319/140‑1 (MQ=255)

                                                          tGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACa                                                                         <  1:2059167/140‑1 (MQ=255)

                                                          tGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACa                                                                         <  1:424393/140‑1 (MQ=255)

                                                             ggATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACatta                                                                      <  1:692012/140‑1 (MQ=255)

                                                                         cATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACa                                                                         >  1:1937325/1‑125 (MQ=255)

                                                                         cATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACa                                                                         <  2:1937325/125‑1 (MQ=255)

                                                                            tAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATAccc                                                       >  2:853412/1‑140 (MQ=255)

                                                                            tAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATAccc                                                       >  1:1650765/1‑140 (MQ=255)

                                                                             aaTCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCg                                                      >  2:175648/1‑140 (MQ=255)

                                                                             aaTCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCg                                                      <  1:175648/140‑1 (MQ=255)

                                                                               tCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGaa                                                    <  1:594597/140‑1 (MQ=255)

                                                                                      cctcATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTAt                                             >  1:58838/1‑140 (MQ=255)

                                                                                       ctcATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATc                                            <  2:1650765/140‑1 (MQ=255)

                                                                                         cATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATccc                                          <  1:2102531/140‑1 (MQ=255)

                                                                                         cATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATccc                                          <  2:1513263/140‑1 (MQ=255)

                                                                                           tgatgGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATccccc                                        >  1:279551/1‑140 (MQ=255)

                                                                                               ggACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATc                                            <  2:896570/132‑1 (MQ=255)

                                                                                               ggACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATc                                            >  1:896570/1‑132 (MQ=255)

                                                                                               ggACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTgg                                    >  1:969462/1‑140 (MQ=255)

                                                                                                 aCTAGTTATAATAAATAAAGGAAACGAAGAAGTTGTAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTCAACATTATTATTAATAATACCCGAAAAATTATCCACCCTGGTa                                  >  1:1658851/1‑140 (MQ=255)

                                                                                                 aCTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAGACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATccc                                          <  2:624864/132‑1 (MQ=255)

                                                                                                 aCTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTgg                                    >  1:1506704/1‑138 (MQ=255)

                                                                                                 aCTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTa                                  <  1:307219/140‑1 (MQ=255)

                                                                                                 aCTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTa                                  >  1:627216/1‑140 (MQ=255)

                                                                                                 aCTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTa                                  <  2:1974039/140‑1 (MQ=255)

                                                                                                 aCTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTa                                  >  2:1388828/1‑140 (MQ=255)

                                                                                                  cTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTaa                                 <  2:66423/140‑1 (MQ=255)

                                                                                                        ataataAATAAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTAtt                           >  2:1224100/1‑140 (MQ=255)

                                                                                                          aataaataAAGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTa                         >  2:740649/1‑140 (MQ=255)

                                                                                                               ttaaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTAttt                          >  2:354638/2‑134 (MQ=255)

                                                                                                               ttaaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTAttt                          <  1:354638/133‑1 (MQ=255)

                                                                                                               ataaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCTAAAAATTATCCCCCCTGGTAAAGTATTTACGCtt                    >  1:1038473/1‑140 (MQ=255)

                                                                                                               ataaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTa                                  <  1:928570/126‑1 (MQ=255)

                                                                                                               ataaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTa                                  >  2:928570/1‑126 (MQ=255)

                                                                                                               ataaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCtt                    >  1:1496894/1‑140 (MQ=255)

                                                                                                               ataaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCtt                    >  2:1606044/1‑140 (MQ=255)

                                                                                                               ataaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCtt                    >  2:2021071/1‑140 (MQ=255)

                                                                                                               ataaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCtt                    >  2:1953296/1‑140 (MQ=255)

                                                                                                               ataaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCtt                    >  2:1670987/1‑140 (MQ=255)

                                                                                                               ataaaGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCtt                    >  2:1953100/1‑140 (MQ=255)

                                                                                                                   aGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCtt                    >  1:659144/1‑136 (MQ=255)

                                                                                                                   aGGAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTagag                >  1:1142150/1‑140 (MQ=255)

                                                                                                                    ggAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAgg               <  2:967580/140‑1 (MQ=255)

                                                                                                                    ggAAACGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAgg               <  2:627216/140‑1 (MQ=255)

                                                                                                                      aaaCGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCg             <  2:1487702/140‑1 (MQ=255)

                                                                                                                      aaaCGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCg             <  1:1388828/140‑1 (MQ=255)

                                                                                                                        aCGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAgg               <  1:164860/136‑1 (MQ=255)

                                                                                                                        aCGAAGAAGTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAgg               >  2:164860/1‑136 (MQ=255)

                                                                                                                              aagTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTa     <  2:58838/140‑1 (MQ=255)

                                                                                                                                gTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGaa          >  2:241466/1‑133 (MQ=255)

                                                                                                                                gTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGaa          <  1:241466/133‑1 (MQ=255)

                                                                                                                                gTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTaaa   <  2:1496894/140‑1 (MQ=255)

                                                                                                                                gTTGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTaaa   <  1:2075104/140‑1 (MQ=255)

                                                                                                                                 ttGAAGGTGCCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAat  <  1:1224100/140‑1 (MQ=255)

GAATATGGAGCGCATTTGAGGGTGTATCTGCAACTAAAAACGTTCTGGCCTTTAGTCGTGGGGATTCTGTGAACATTAATCACTCTCCTCATGATGGACTAGTTATAATAAATAAAGGAAACGAAGAAGTTGAAGGTACCTGGCCTAACAAATTGCAACCTGGAATATACAAAAACATGGGGAGTAATAGCGTTAACATTATTATTAATAATACCCGAAAAATTATCCCCCCTGGTAAAGTATTTACGCTTAGAGGCGGAACTCTAAAT  >  NC_000913/2788309‑2788577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`