BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,198,918	C→T	S75F (TCC→TTC)	lit →	e14 prophage; cell death peptidase Lit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,198,918	0	C	T	100.0%	404.5 / NA	112	S75F (TCC→TTC)	lit	e14 prophage; cell death peptidase Lit
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (53/59); total (53/59)

Only 100 of 112 total aligned reads displayed.

ATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAAA  >  NC_000913/1198782‑1199052

aTAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCaa                                                                                                                                     <  1:794301/140‑1 (MQ=255)

aTAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCaa                                                                                                                                     >  2:1240870/1‑140 (MQ=255)

aTAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCaa                                                                                                                                     >  1:606709/1‑140 (MQ=255)

aTAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCaa                                                                                                                                     <  2:1339978/140‑1 (MQ=255)

aTAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCaa                                                                                                                                     >  2:1671878/1‑140 (MQ=255)

 tAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAAt                                                                                                                                    >  1:1933566/1‑140 (MQ=255)

 tAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAAt                                                                                                                                    >  2:1073006/1‑140 (MQ=255)

          acAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTgg                                                                                                                           <  2:728679/140‑1 (MQ=255)

           cAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTggg                                                                                                                          >  1:558652/1‑140 (MQ=255)

            aaaaaaaTTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGt                                                                                                                         <  1:1306955/140‑1 (MQ=255)

            aaaaaaaTTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGt                                                                                                                         <  1:1766635/140‑1 (MQ=255)

              aaaaaTTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGttt                                                                                                                       >  2:736342/1‑140 (MQ=255)

              aaaaaTTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGttt                                                                                                                       <  1:987844/140‑1 (MQ=255)

               aaaaTTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGtttt                                                                                                                      <  2:1790759/140‑1 (MQ=255)

                    tataATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGc                                                                                                                 <  1:2081466/140‑1 (MQ=255)

                    tataATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGc                                                                                                                 <  1:313525/140‑1 (MQ=255)

                    tataATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGc                                                                                                                 <  2:1154064/140‑1 (MQ=255)

                      taATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCaa                                                                                                               >  2:81666/1‑140 (MQ=255)

                       aaTTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAag                                                                                                              <  1:1509543/140‑1 (MQ=255)

                        aTTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAaga                                                                                                             <  2:1110861/140‑1 (MQ=255)

                         tttCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAagag                                                                                                            <  1:1671878/140‑1 (MQ=255)

                            cAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTAc                                                                                                         >  1:95591/1‑140 (MQ=255)

                                   gagtgaACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAAt                                                                                                  <  1:2063679/140‑1 (MQ=255)

                                    agtgaACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAAtc                                                                                                 >  1:1295453/1‑140 (MQ=255)

                                        aaCCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAg                                                                                             <  2:2071952/140‑1 (MQ=255)

                                         aCCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAagag                                                                                                            <  1:952428/124‑1 (MQ=255)

                                         aCCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAagag                                                                                                            >  2:952428/1‑124 (MQ=255)

                                          ccTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGaa                                                                                           <  1:81666/140‑1 (MQ=255)

                                            tGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAg                                                                                             <  1:1931170/136‑1 (MQ=255)

                                            tGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAg                                                                                             >  2:1931170/1‑136 (MQ=255)

                                              gTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaat                                                                                       >  1:284523/1‑140 (MQ=255)

                                               ttttAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaata                                                                                      <  2:606709/140‑1 (MQ=255)

                                                        ccGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaata                                                                                      <  1:1285118/131‑1 (MQ=255)

                                                        ccGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaata                                                                                      >  2:1285118/1‑131 (MQ=255)

                                                        ccGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGc                                                                             >  2:875940/1‑140 (MQ=255)

                                                        ccGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGc                                                                             >  2:337225/1‑140 (MQ=255)

                                                        ccGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGc                                                                             >  1:1352435/1‑140 (MQ=255)

                                                           aGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACt                                                                          >  1:2132721/1‑140 (MQ=255)

                                                                 gaagaaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGAtt                                                                    >  2:751566/1‑140 (MQ=255)

                                                                 gaagaaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGAtt                                                                    >  1:1928123/1‑140 (MQ=255)

                                                                    gaaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTaa                                                                 <  2:1928123/140‑1 (MQ=255)

                                                                    gaaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTaa                                                                 <  2:1352435/140‑1 (MQ=255)

                                                                      aTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACa                                                               <  1:1073006/140‑1 (MQ=255)

                                                                       tGAGAGTAATAATACACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAg                                                              >  2:1192969/1‑140 (MQ=255)

                                                                           agTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaaa                                                          >  1:963398/1‑140 (MQ=255)

                                                                           agTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaaa                                                          >  1:1639824/1‑140 (MQ=255)

                                                                            gTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaaaa                                                         >  1:268648/1‑140 (MQ=255)

                                                                              aataatTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaaaaaa                                                       <  1:1179113/140‑1 (MQ=255)

                                                                              aataatTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaaaaaa                                                       <  2:89140/140‑1 (MQ=255)

                                                                               ataatTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAAt                                                      >  1:1898385/1‑140 (MQ=255)

                                                                                  atTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAgg                                                   <  2:558652/140‑1 (MQ=255)

                                                                                     cacaTGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCtt                                                >  1:559489/1‑140 (MQ=255)

                                                                                     cacaTGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCtt                                                >  2:819696/1‑140 (MQ=255)

                                                                                       caTGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTaa                                              >  1:813095/1‑140 (MQ=255)

                                                                                        aTGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTaaa                                             >  2:520391/1‑140 (MQ=255)

                                                                                          gAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTaaaaa                                           >  2:141417/1‑140 (MQ=255)

                                                                                             aTAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTc                                        >  2:861431/1‑140 (MQ=255)

                                                                                               aGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtg                                      <  2:945138/140‑1 (MQ=255)

                                                                                                 ttCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgat                                    >  2:325553/1‑140 (MQ=255)

                                                                                                 ttCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgat                                    >  2:1834182/1‑140 (MQ=255)

                                                                                                  tCTACCAGTAGTTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTATGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatg                                   <  2:1212125/140‑1 (MQ=255)

                                                                                                  tCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatg                                   >  1:1922296/1‑140 (MQ=255)

                                                                                                  tCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatg                                   <  2:1933566/140‑1 (MQ=255)

                                                                                                  tCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatg                                   <  2:1993121/140‑1 (MQ=255)

                                                                                                  tCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatg                                   <  1:1934800/140‑1 (MQ=255)

                                                                                                  tCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatg                                   <  2:1030975/140‑1 (MQ=255)

                                                                                                  tCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatg                                   <  1:875940/140‑1 (MQ=255)

                                                                                                   cTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatga                                  <  2:2028614/140‑1 (MQ=255)

                                                                                                    tAACAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGaa                                 <  2:1676803/140‑1 (MQ=255)

                                                                                                      aCAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGaa                                 <  1:1193942/138‑1 (MQ=255)

                                                                                                      aCAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGaa                                 >  2:1193942/1‑138 (MQ=255)

                                                                                                      aCAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAAct                               >  2:557539/1‑140 (MQ=255)

                                                                                                      aCAGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAAct                               >  2:1038267/1‑140 (MQ=255)

                                                                                                        aGTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAActtc                             <  1:337225/140‑1 (MQ=255)

                                                                                                         gTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTaaaaa                                           >  2:1725247/1‑125 (MQ=255)

                                                                                                         gTAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTaaaaa                                           <  1:1725247/125‑1 (MQ=255)

                                                                                                          tAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatg                                   >  1:2048914/1‑132 (MQ=255)

                                                                                                          tAGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatg                                   <  2:2048914/132‑1 (MQ=255)

                                                                                                           aGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTa                          >  2:43234/1‑140 (MQ=255)

                                                                                                           aGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTa                          >  2:437348/1‑140 (MQ=255)

                                                                                                           aGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTa                          >  2:1536564/1‑140 (MQ=255)

                                                                                                           aGCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTa                          >  2:1519288/1‑140 (MQ=255)

                                                                                                            gCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGaa                                 >  1:124840/1‑132 (MQ=255)

                                                                                                            gCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGaa                                 <  2:124840/132‑1 (MQ=255)

                                                                                                            gCTTCACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTaa                         <  2:559489/140‑1 (MQ=255)

                                                                                                                cACTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATgg                     >  1:781944/1‑140 (MQ=255)

                                                                                                                  cTTGAATATATTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGc                   <  1:751566/140‑1 (MQ=255)

                                                                                                                       atatatTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGa              <  2:1295453/140‑1 (MQ=255)

                                                                                                                           atTTGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGaaaaa          >  1:1185890/1‑140 (MQ=255)

                                                                                                                              tGGGCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACtt       <  1:1890032/140‑1 (MQ=255)

                                                                                                                               gggCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTg      >  2:2022147/1‑140 (MQ=255)

                                                                                                                               gggCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTg      <  1:1881295/140‑1 (MQ=255)

                                                                                                                                ggCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGaaa            >  2:1315384/1‑133 (MQ=255)

                                                                                                                                ggCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGc     >  2:1379531/1‑140 (MQ=255)

                                                                                                                                ggCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGc     >  1:1133867/1‑140 (MQ=255)

                                                                                                                                ggCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGc     >  2:1560818/1‑140 (MQ=255)

                                                                                                                                ggCATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGc     <  1:437348/140‑1 (MQ=255)

                                                                                                                                  cATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCaa   <  1:1536564/140‑1 (MQ=255)

                                                                                                                                  cATTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCaa   <  1:1560818/140‑1 (MQ=255)

                                                                                                                                   aTTTTTCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCaaa  >  2:835985/1‑140 (MQ=255)

ATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAATTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAAA  >  NC_000913/1198782‑1199052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`