| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 699424 = | NA (NA) | 6 (0.220) | 4/206 | 2.7 | NA | intergenic (‑247/+150) | asnB/umpH | asparagine synthetase B/UMP phosphatase |
| ? | NC_000913 | = 2133430 | NA (NA) | intergenic (‑33/+60) | wcaA/wzc | putative colanic acid biosynthesis glycosyl transferase/protein‑tyrosine kinase Wzc | |||||
GCTGAAATCGACGTTATCTGAATAGCAACCACGTCTGCGGACGTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/699594‑699424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggataaggcgttcacgccgcatccggcaAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAGGACTACAGCA < NC_000913/2133430‑2133298 GCTGAAATCGACGTTATCTGAATAGCAACCACGTCTGCGGACGTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAG < 2:143678/140‑1 TATCTGAATAGCAACCACGTCTGCGGACGTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGT > 1:309567/1‑140 AATAGCAACCACGTCTGCGGACGTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGC < 2:351439/140‑1 ACCACGTCTGCGGACGTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 2:316535/1‑140 ACGTCTGCGGACGTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:316535/140‑1 GTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAaa > 2:538059/1‑130 GTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAaa < 1:538059/132‑3 GTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATC > 1:456062/1‑124 GTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTCCACGCCGCATC < 2:456062/124‑1 TCAGTCCTACGAAAATCTTGCAATGTATTGAATTTTCATGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATC > 1:581880/1‑140 CTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG > 1:45682/1‑140 CAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCG < 2:45682/140‑1 gTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGG > 2:527650/2‑140 TAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATACCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTT < 2:329701/140‑1 TCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAATTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAG > 1:615745/1‑140 TCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAG < 1:141092/140‑1 TCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAG > 2:432585/1‑140 CATCCGGCAAGCAACCCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGAAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAGGACTACAG < 1:620450/140‑1 CATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAGGACTACAG < 2:573407/140‑1 TCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAGGACTACAGCA < 1:432585/140‑1 GCTGAAATCGACGTTATCTGAATAGCAACCACGTCTGCGGACGTGGTTGGCTCTGATGACAAACGCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGCAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/699594‑699424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggataaggcgttcacgccgcatccggcaAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAGGACTACAGCA < NC_000913/2133430‑2133298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |