New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	339959 =	NA (NA)	7 (0.240) +TCACGCCGCATCCGGCAGTCGTGCGCAG	7/220	2.0	NA	coding (167/297 nt)	yahH	putative uncharacterized protein YahH
	?	NC_000913	377433 =	NA (NA)					intergenic (+122/+102)	yaiL/frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB

CGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTA  >  NC_000913/339827‑340088                                                                                                                                     |                                                                                                                                  gataatagcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatctgcgcacgactgccggatgcggcgtgaa                                                                                                                                   <  1:224847‑M1/1‑1 (MQ=255) gataatagcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatctgcgcacgactgccggatgcggcgtgaa                                                                                                                                   >  2:224847‑M1/133‑133 (MQ=255) cgcATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTa                                                                                                                            >  2:70906/1‑140 (MQ=255) cgcATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTa                                                                                                                            >  2:21384/1‑140 (MQ=255)   cATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATc                                                                                                                          <  1:21384/140‑1 (MQ=255)        ggCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGcc                                                                                                                     <  1:70906/140‑1 (MQ=255)          acgactgccggatgcggcgtgaacgccttatccggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatctgcgcacgactgccggatgcggtgtgaAc                                                                                                                                  >  2:142776‑M1/124‑125 (MQ=255)          acgactgccggatgcggcgtgaacgccttatccggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcaccaggcatctgcgcacgactgccggatgcggtgtgaAc                                                                                                                                  <  1:142776‑M1/2‑1 (MQ=255)                   tttatGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGgcg                                                                                                          <  2:5727/136‑1 (MQ=255)                   cggatgcggcgtgaacgccttatccggcctacacttcgcccgtaagccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgactgccggatgcggcgtgaACGCCTTATCCGGCCTACGGGTGgcg                                                                                                          >  1:354746‑M1/115‑140 (MQ=255)                   ccATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAcaaac                                                                                                              >  1:328798/1‑132 (MQ=255)                   ccATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAcaaac                                                                                                              <  2:328798/136‑5 (MQ=255)                         ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGgc                                                                                                           >  1:16427/1‑133 (MQ=40)                         ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGgc                                                                                                           <  2:16427/133‑1 (MQ=255)                                                    gCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCAt                                                                         <  1:522736/140‑1 (MQ=255)                                                    gCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCAt                                                                         >  2:557456/1‑140 (MQ=255)                                                        aCGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAgg                                                                     <  1:557456/140‑1 (MQ=255)                                                           gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatctgcgcacgactgccggatgcggcgtgaACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                                                    <  1:429569‑M1/48‑1 (MQ=255)                                                           gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatctgcgcacgactgccggatgcggcgtgaACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                                                    >  2:429569‑M1/75‑122 (MQ=255)                                                              ggCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtcgt                                                               >  1:77400/1‑137 (MQ=255)                                                               gcgcAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAttga                                                               <  2:283768/139‑3 (MQ=255)                                                               gcgcAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAttga                                                               >  1:283768/1‑137 (MQ=255)                                                                               gCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgc                                              <  2:335374/140‑1 (MQ=255)                                                                                   gATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgcggcg                                          >  2:247174/1‑140 (MQ=255)                                                                                     tAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgcggcacc                                        <  1:25338/140‑4 (MQ=255)                                                                                                               gttcatGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCATTATCCGGCCTACGAGTGgc              <  2:598741/135‑1 (MQ=255)                                                                                                               accacTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGgc              <  1:419290/140‑1 (MQ=255)                                                                                                                ccacTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGCGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGGATTTGTCACCATTGCCGGATGCGGCGGGTACGCCTTATCCGGCCTACGGGTGgcg             >  1:457092/1‑140 (MQ=14)                                                                                                                    tGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGGGCgag         >  1:581513/1‑140 (MQ=255)                                                                                                                           tGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGGGGCGCGGGAATTTTa  >  2:223045/1‑140 (MQ=255)                                                                                                                                     |                                                                                                                                  CGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTA  >  NC_000913/339827‑340088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.