| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3281704 | NA (NA) | 15 (0.440) | 8/262 | 2.2 | NA | noncoding (2/36 nt) | other | REP239a |
| ? | NC_000913 | = 3281780 | NA (NA) | noncoding (5/34 nt) | other | REP239b | |||||
TCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACG > NC_000913/3281649‑3281917 | tCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATcc < 1:283298/140‑1 (MQ=255) ccccGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGc > 2:582408/1‑140 (MQ=255) ccccGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGc < 2:358463/140‑1 (MQ=255) tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTTGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtctt > 2:132933/1‑140 (MQ=255) tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtctt < 1:184323/140‑1 (MQ=255) ttctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttt > 2:318050/1‑140 (MQ=255) tctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtctttt > 1:378137/1‑140 (MQ=255) tgCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGt > 1:565837/1‑140 (MQ=255) gtgtCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTAttt > 2:365466/1‑140 (MQ=255) gtgtCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTAttt < 2:378137/140‑1 (MQ=255) tCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCtt > 2:93092/1‑140 (MQ=255) tCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCtt > 1:276266/1‑140 (MQ=255) tCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCtt > 2:521152/1‑140 (MQ=255) ggATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCtttt > 1:169015/1‑140 (MQ=255) aTGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCtttttt < 1:60404/140‑1 (MQ=255) cGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCAt < 1:365466/140‑1 (MQ=255) gCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCAtt < 1:318050/140‑1 (MQ=255) aaCGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGaa < 2:535500/140‑1 (MQ=255) tCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCa > 2:521643/1‑140 (MQ=255) aTCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGttt < 1:132933/140‑1 (MQ=255) tCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGtttc < 1:582408/140‑1 (MQ=255) cGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaa < 2:459590‑M2/140‑90 (MQ=255) cGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaa < 1:161326‑M2/140‑90 (MQ=255) cGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaa < 1:597206‑M2/140‑90 (MQ=255) cGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGtttctt > 2:168974/1‑140 (MQ=255) cGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGtttctt > 1:489516/1‑140 (MQ=255) gACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGtttcttt > 2:344603/1‑140 (MQ=255) aCCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagc < 2:555709‑M2/140‑92 (MQ=255) ccTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGtttcttttc > 2:458898/1‑140 (MQ=255) aCAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCtat > 2:35472/1‑140 (MQ=255) gACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctga > 1:459590‑M2/1‑36 (MQ=255) aCCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaa > 2:161326‑M2/1‑35 (MQ=255) ccGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATc < 2:129367/140‑1 (MQ=255) cGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCa > 1:87596/1‑140 (MQ=255) cGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCa > 2:228845/1‑140 (MQ=255) cAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAAc > 1:573893/1‑140 (MQ=255) aaGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACg < 2:347886/140‑1 (MQ=255) ggCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGaa < 2:169015/140‑1 (MQ=255) ggATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGAc < 2:361290/140‑1 (MQ=255) gATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACa < 1:168974/140‑1 (MQ=255) gATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACa < 2:489516/140‑1 (MQ=255) aTAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACAt > 1:544011/1‑140 (MQ=255) aaGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCAc < 1:35472/140‑1 (MQ=255) cGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCaa > 1:235403/1‑140 (MQ=255) tttGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaatccagatttgttgcacatgta > 2:597206‑M2/1‑14 (MQ=255) tGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaatccagatttgttgcacatgta < 2:474733‑M2/138‑127 (MQ=255) tGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaatccagatttgttgcacatgta < 1:170688‑M2/138‑127 (MQ=255) tGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaatccagatttgttgcacatgta > 2:170688‑M2/1‑12 (MQ=255) tGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaatccagatttgttgcacatgta > 1:474733‑M2/1‑12 (MQ=255) tGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaatccagatttgttg < 2:467410‑M2/130‑119 (MQ=255) tGCGCCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaatccagatttgttg > 1:467410‑M2/1‑12 (MQ=255) tGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACa > 1:439478/1‑129 (MQ=255) tGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACa < 2:439478/129‑1 (MQ=255) tGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGtga > 2:409112/1‑140 (MQ=255) gcgcCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaatccagatttgttgcacatgtagcc < 2:13031‑M2/140‑130 (MQ=255) gcgcCGCATCCgacaccgctgcacagatcaaaacgaaagaaaaagaaaggccttacgggggaagtgaaggcccaataaaggagcaaactatcaaaacgaagctaattgaccctgaatccagatttgttgcacatgtagcc < 1:585312‑M2/140‑130 (MQ=255) tCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACg < 1:521643/140‑1 (MQ=255) | TCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTCTATAGATTTTAATCAACGAAAGACATCACCAAGTGAAATGAAACG > NC_000913/3281649‑3281917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |