| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 375023 = | NA (NA) | 9 (0.320) | 5/192 | 2.6 | NA | intergenic (+142/‑436) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377530 = | NA (NA) | intergenic (+219/+5) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
AACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/375203‑375023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggataaggcgttcacgccgcatccggcagtcgtgcTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCATAAC > NC_000913/377530‑377617 tgCGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCG < 1:40252/138‑1 GTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGC < 2:645063/140‑1 GTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGC < 2:672292/140‑1 TCTTATCAGGCCTACAAATTCTCGCGCCGCCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGCAGGCC > 2:649222/1‑140 TCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCC > 1:317818/1‑140 CTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCG > 1:160082/1‑140 CTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCG > 2:110028/1‑140 CTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCG > 2:38999/1‑140 CTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCG > 2:110918/1‑140 TTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGG > 2:328910/1‑140 ATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGAT > 1:665057/1‑140 CAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAA < 1:285880/140‑1 CTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGT > 1:188087/1‑140 CAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCA > 1:583386/1‑140 AATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACG < 1:328910/140‑1 AATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACG < 1:387952/140‑1 TCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCG > 1:117206/1‑140 CTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGC > 1:8795/1‑140 TCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCA < 1:110918/140‑1 TCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCA < 2:317818/140‑1 CGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTGGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCAT > 1:651845/1‑140 CGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:462150/1‑140 CGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:543653/1‑140 CGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 2:580693/1‑140 CGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 2:387952/1‑140 CGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:230154/1‑140 CGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 2:246130/1‑140 tgacttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTGGT‑‑‑‑‑‑‑‑TGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGT < 1:512170/134‑1 CCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG < 1:389428/140‑1 ACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA < 2:543653/140‑1 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAatgg < 1:580693/140‑5 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCG < 1:48674/140‑1 gagcCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCTTCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGT < 2:72656/136‑1 gAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTG‑GCGCACAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAacgg < 2:466609/139‑5 TAGGCGGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGT < 2:184204/140‑1 TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGT < 1:605151/140‑1 TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGT < 1:550226/140‑1 TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGT < 2:213274/140‑1 TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGT < 2:554910/140‑1 TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGT < 1:38999/140‑1 GGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAAC < 1:614347/140‑1 CTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCG < 2:620652/57‑1 TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAA > 2:470139/1‑140 TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAA > 1:185539/1‑140 TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAA > 1:356349/1‑140 TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAA > 1:391571/1‑140 TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAA > 2:125723/1‑129 TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAA < 1:125723/129‑1 TCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCAT > 2:266145/1‑140 CGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCATAAC > 1:295140/1‑140 AACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCA‑GATGCCTGATGCGACGC‑TAACGCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/375203‑375023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggataaggcgttcacgccgcatccggcagtcgtgcTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCATAAC > NC_000913/377530‑377617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |