| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4628780 | NA (NA) | 9 (0.250) | 6/240 | 2.9 | NA | noncoding (37/37 nt) | other | REP354b |
| ? | NC_000913 | = 4633089 | NA (NA) | intergenic (+3/+144) | trpR/yjjX | DNA‑binding transcriptional repressor TrpR/ITPase/XTPase | |||||
ACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGC > NC_000913/4628649‑4628916 | cccTGCAGGGGTACCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACa < 2:409691/139‑1 (MQ=255)aCCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACa < 1:684654/140‑1 (MQ=255) gCACGGGGAACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGt < 1:236513/140‑1 (MQ=255) cgggggTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTa < 2:47921/137‑1 (MQ=255) cGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAaaatcaatcgcttttcagcaacac < 1:394273‑M1/140‑25 (MQ=255) aCGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGt‑t > 1:343427/1‑140 (MQ=255) gATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCTGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCgg > 2:32047/1‑140 (MQ=255) tGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGAt < 1:253503/140‑1 (MQ=255) gCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAgg > 2:83642/1‑133 (MQ=255) gCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAgg < 1:83642/133‑1 (MQ=255) gttgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTcg > 1:357263/1‑140 (MQ=255) tgtAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTcgcg > 2:600616/1‑140 (MQ=255) aaaCGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTAC‑‑‑‑‑CA‑AACATATTGAAATTACGGGTATTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAttc < 1:684290/140‑2 (MQ=11) ggTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAtt < 1:600616/140‑1 (MQ=255) gtTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa > 2:294255/1‑140 (MQ=255) tCACGCCGCATCTGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACg < 1:32047/140‑1 (MQ=255) tCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgtt > 2:323010‑M1/1‑68 (MQ=255) tCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACg > 2:377701/1‑140 (MQ=255) cACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgtta > 2:690358‑M1/1‑67 (MQ=255) cACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgtta > 2:534252‑M1/1‑67 (MQ=255) cACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgtta > 2:103632‑M1/1‑67 (MQ=255) cACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcag > 2:553256‑M1/1‑67 (MQ=255) cACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcag < 1:553256‑M1/133‑67 (MQ=255) cACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGc > 1:670936/1‑140 (MQ=255) cgcATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc > 1:323582/1‑140 (MQ=255) aTCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTc > 1:40297/1‑140 (MQ=255) aTCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTc > 1:113132/1‑140 (MQ=255) gCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAAt < 1:351779/140‑1 (MQ=255) cATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATa < 1:699094/140‑1 (MQ=255) aTTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgttagatccacgcgtaatc < 1:690358‑M1/140‑89 (MQ=255) aTGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGa < 1:377701/140‑1 (MQ=255) gATGCGACGCTTACCGCGTCTTATCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgttagatccacgcgtaatcgtcgcgatgcctgcgccg > 1:37157‑M1/1‑34 (MQ=255) cGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTc > 1:432320/1‑140 (MQ=255) cTTATCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgttagatccacgcgtaatcgtcgcgatgcctgcgccgagttcattttttaactcac < 2:164543‑M1/140‑126 (MQ=255) cTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTgc > 2:507335/1‑140 (MQ=255) ttATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTgcg < 1:507335/140‑1 (MQ=255) aTCAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgttagatccacgcgtaatcgtcgcgatgcctgcgccgagttcattttttaactcacgct > 1:185245‑M1/1‑12 (MQ=255) aTCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGcc > 2:675706/1‑140 (MQ=255) cAGGCCTACAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgttagatccacgcgtaatcgtcgcgatgccttgcgccgagttcattttttaactcacgctg < 1:323010‑M1/140‑131 (MQ=255) tACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtgc < 2:432320/140‑1 (MQ=255) aCAaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctgttagatccacgcgtaatcgtcgcgatgcctgcgccgagttcattttttaactcacgctggctcattt > 1:170398‑M1/1‑3 (MQ=255) | ACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGT‑TTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGC > NC_000913/4628649‑4628916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |