New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 375102 =NA (NA)28 (0.720) 13/216 1.6 NA noncoding (17/36 nt) other REP31d
?NC_000913 377351 = NA (NA)noncoding (16/37 nt) other REP32a

CGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCC  >  NC_000913/374963‑375235
                                                                                                                                            |                                                                                                                                          
CGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGtt                                                                                                                                            <  1:569576‑M1/140‑1 (MQ=255)
 acacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcat                                                                                                                                            >  2:199340‑M1/140‑140 (MQ=255)
    tGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCg                                                                                                                                        <  2:45716/140‑1 (MQ=37)
      tcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGt                                                                                                                                       >  2:850697‑M1/135‑140 (MQ=255)
      gCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                                                                                                                      >  1:95786/1‑140 (MQ=39)
        gcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCg                                                                                                                                     >  1:120306‑M1/133‑140 (MQ=255)
          gagaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt                                                                                                                                  >  1:176617/1‑140 (MQ=35)
          gagaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt                                                                                                                                  >  1:694475/1‑140 (MQ=34)
          gagaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt                                                                                                                                  >  2:194650/1‑140 (MQ=35)
            gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATc                                                                                                                                 <  2:20087‑M1/12‑1 (MQ=255)
            gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATc                                                                                                                                 <  1:452912‑M1/12‑1 (MQ=255)
            gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATc                                                                                                                                 <  1:448936‑M1/12‑1 (MQ=255)
            gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATc                                                                                                                                 <  1:580622‑M1/12‑1 (MQ=255)
            gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATc                                                                                                                                 <  2:466295‑M1/12‑1 (MQ=255)
             gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcgggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgtTAGCGTCGCATCa                                                                                                                                <  1:586940‑M1/13‑1 (MQ=255)
             gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaacctaggcctggtaagacgcgcctagcgtcccctta                                                                                                                                <  1:550057‑M1/13‑7 (MQ=255)
             gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgtTAGCGTCGCATCa                                                                                                                                <  1:585347‑M1/13‑1 (MQ=255)
             gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgtTAGCGTCGCATCa                                                                                                                                <  1:833340‑M1/13‑1 (MQ=255)
               tttGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGc                                                                                                                             >  2:399938/1‑140 (MQ=34)
                      gTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑G                                                                                                                 <  2:694475‑M1/140‑1 (MQ=255)
                       gcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTgc‑‑‑‑‑g                                                                                                                 >  1:268356‑M1/118‑140 (MQ=255)
                       gcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTgc‑‑‑‑‑g                                                                                                                 <  2:750628‑M1/23‑1 (MQ=255)
                       gcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTgc‑‑‑‑‑g                                                                                                                 >  1:267023‑M1/118‑140 (MQ=255)
                          tgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCAc                                                                                                              <  2:295099‑M1/26‑1 (MQ=255)
                                aCGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCATGGC‑‑‑‑‑GCACGACTGCC                                                                                                       >  2:531290‑M1/1‑140 (MQ=255)
                                aCGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCC                                                                                                       >  1:77833‑M1/1‑140 (MQ=255)
                                aCGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCC                                                                                                       >  2:237526‑M1/1‑140 (MQ=255)
                                  gcgTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGG                                                                                                     >  1:66592‑M1/1‑140 (MQ=255)
                                    cgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGa                                                                                                            >  2:607938‑M1/105‑132 (MQ=255)
                                    cgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGa                                                                                                            <  1:607938‑M1/28‑1 (MQ=255)
                                           tCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTG                                                                                           >  1:10604‑M1/1‑140 (MQ=255)
                                             tcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTg                                                                                           <  2:586408‑M1/45‑1 (MQ=255)
                                              cgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑ACACGACTGccggatgcgataaac                                                                                          <  2:77165‑M1/46‑7 (MQ=255)
                                              cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAA                                                                                         >  1:424702‑M1/1‑140 (MQ=255)
                                              cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAA                                                                                         >  2:735164‑M1/1‑140 (MQ=255)
                                                      aTCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTAT                                                                                 <  2:308900‑M1/140‑1 (MQ=255)
                                                      aTCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTAT                                                                                 <  1:35280‑M1/140‑1 (MQ=255)
                                                          gcgcACGACTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGG                                                                             <  2:424702‑M1/140‑1 (MQ=255)
                                                             cACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCt                                                                          >  2:618021/1‑140 (MQ=37)
                                                              aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATGGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTAC                                                                        >  2:345328‑M1/1‑140 (MQ=255)
                                                                     ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACacttcg                                                                  <  1:237526‑M1/140‑7 (MQ=255)
                                                                     ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCAAAGCGTCGCATCAGGCATGGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                                                <  1:440173/140‑1 (MQ=14)
                                                                      cGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACacttcgc                                                                 <  2:77833‑M1/140‑8 (MQ=255)
                                                                       ggATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                                                <  2:10604/140‑1 (MQ=40)
                                                                           gcggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCATGGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACacttcgcccata                                                            <  2:724177‑M1/140‑13 (MQ=255)
                                                                             gcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgtTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                           >  2:585347‑M1/64‑140 (MQ=255)
                                                                             gcggcgtgaacgccttagccggtctacacttcgcccataaaccgtaggcctgataagacgcgtTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                           >  2:586940‑M1/64‑140 (MQ=255)
                                                                             cggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                           >  1:586408‑M1/64‑140 (MQ=255)
                                                                               cgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAAtt                                                        >  1:418746/1‑140 (MQ=255)
                                                                                  tgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTg                                                      >  1:20087‑M1/59‑140 (MQ=255)
                                                                                  tgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTg                                                      >  2:471941‑M1/59‑140 (MQ=255)
                                                                                  gtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgtTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTg                                                      >  2:833340‑M1/59‑140 (MQ=255)
                                                                                     acgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGATAATAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAAtt                                                        <  2:715871‑M1/85‑1 (MQ=255)
                                                                                      gCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc                                                 <  2:160564/140‑1 (MQ=255)
                                                                                            tCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATGGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACacttcgcccataaaccgtaggcctgataag                                          <  1:345328‑M1/140‑31 (MQ=255)
                                                                                            atccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCga                                                             >  2:97561‑M1/49‑123 (MQ=255)
                                                                                            atccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCga                                                             <  1:97561‑M1/75‑1 (MQ=255)
                                                                                               ggCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACacttcgcccataaaccgtaggcctgataagac                                        <  1:618021‑M1/140‑33 (MQ=255)
                                                                                                          ggCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGt                             <  1:118400/140‑1 (MQ=40)
                                                                                                          ggCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGt                             <  2:25880/140‑1 (MQ=40)
                                                                                                          ggCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGt                             <  1:735164/140‑1 (MQ=40)
                                                                                                           gcgcGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                            >  1:25880/1‑140 (MQ=40)
                                                                                                            gcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGa                                        >  2:744641‑M1/33‑128 (MQ=255)
                                                                                                            gcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGa                                        <  1:744641‑M1/96‑1 (MQ=255)
                                                                                                               gggAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACacttcgcccataaaccgtaggcctgataagacgcgcatagcgtcgcat                        >  1:826184‑M1/1‑92 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGCC‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                          <  1:209307‑M1/95‑1 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                          <  1:763832‑M1/94‑1 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                          >  1:396633‑M1/29‑122 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                          >  2:763832‑M1/29‑122 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                          <  2:396633‑M1/94‑1 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                          >  1:598522‑M1/29‑122 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                          >  2:682645‑M1/29‑122 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                          <  2:598522‑M1/94‑1 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                          <  1:682645‑M1/94‑1 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                          <  2:295010‑M1/94‑1 (MQ=255)
                                                                                                                gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                          >  1:295010‑M1/29‑122 (MQ=255)
                                                                                                                gtaagccgtaggactgataagacgcgcaAAGCGTCGCATCAGGCATCTGCC‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                          >  2:209307‑M1/29‑123 (MQ=255)
                                                                                                                gtaagccgTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                       >  1:628930/8‑140 (MQ=255)
                                                                                                                gtaagccgTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                       >  2:708021/8‑140 (MQ=255)
                                                                                                                gtaagccgTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                       >  1:597795/8‑140 (MQ=255)
                                                                                                                gtaagccgTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                       >  1:573870/8‑140 (MQ=255)
                                                                                                                gtaagccgTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                       >  1:566003/8‑140 (MQ=255)
                                                                                                                gtaagccgTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                       >  1:833647/8‑140 (MQ=255)
                                                                                                                gtaagccgTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                       >  2:497181/8‑140 (MQ=255)
                                                                                                                gtaagccgTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                       >  1:774216/8‑140 (MQ=255)
                                                                                                                ataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGAcg                                      <  2:76073‑M1/98‑1 (MQ=255)
                                                                                                                ataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGAcg                                      >  1:76073‑M1/29‑126 (MQ=255)
                                                                                                                 taagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                       <  1:301280‑M1/113‑1 (MQ=255)
                                                                                                                          ggCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc             <  2:129469/140‑1 (MQ=37)
                                                                                                                          ggCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc             <  2:573870/140‑1 (MQ=37)
                                                                                                                             cTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCa          <  1:497181/140‑1 (MQ=34)
                                                                                                                                     aCGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccg  >  1:738047‑M1/1‑70 (MQ=255)
                                                                                                                                            |                                                                                                                                          
CGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGC‑‑‑‑‑GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCC  >  NC_000913/374963‑375235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.