New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	375023 =	NA (NA)	4 (0.120)	3/192	4.0	NA	intergenic (+142/‑436)	mhpE/mhpT	4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter
	?	NC_000913	377530 =	NA (NA)					intergenic (+219/+5)	yaiL/frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB
Rejected: Coverage evenness skew score above cutoff.

GACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCATAACCCTCGTGATAACGGATTAA  >  NC_000913/377391‑377636                                                                                                                                             |                                                                                                           ggccggataaggcgttcacgccgcatccggcagtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCt                                                                                                            <  1:125225‑M2/101‑1 (MQ=255)       ataaggcgttcacgccgcatccggcagtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATc                                                                                                      >  1:188308‑M2/34‑140 (MQ=255)       ataaggcattcacgccgcatccggcagtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATc                                                                                                      >  2:831959‑M2/34‑140 (MQ=255)           ggcgttcacgccgcatccggcagtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACg                                                                                                  <  1:711971‑M2/111‑1 (MQ=255)            gcgttcacgccgcatccggcagtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGTTAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGc                                                                                                 <  2:433701‑M2/112‑1 (MQ=255)                tcacgccgcatccggcagtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCatat                                                                                             >  1:532378‑M2/25‑140 (MQ=255)                 cacgccgcatccggcagtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATAtt                                                                                            >  2:842700‑M2/24‑140 (MQ=255)                 cacgccgcatccggcagtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATAtt                                                                                            <  1:606676‑M2/117‑1 (MQ=255)                   cgccgcatccggcagtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCa                                                                                          >  2:231380‑M2/22‑140 (MQ=255)                                agtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTg                                                                             <  2:518708‑M2/132‑1 (MQ=255)                                 gtcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTgg                                                                            <  2:103631‑M2/133‑1 (MQ=255)                                  tcgtgcGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCTTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGt                                                                           <  2:188308‑M2/134‑1 (MQ=255)                                    gTGCGCCATGCCTGATGCGACGCTTT‑‑GCGTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAgg                                                                        <  2:440173/140‑1 (MQ=14)                                            tGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATg                                                                 >  1:737207/1‑140 (MQ=255)                                                                gcgTTTTATCAGGCCTACGGCTT‑ACGGGCAAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGgaga                                             <  1:505945/140‑1 (MQ=255)                                                                gcgTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGgaga                                             <  2:267023/140‑1 (MQ=255)                                                                gcgTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGgaga                                             <  2:532378/140‑1 (MQ=255)                                                                        tCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAaataa                                     <  1:199340/140‑1 (MQ=255)                                                                           ggCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAg                                  <  1:231380/140‑1 (MQ=255)                                                                              cTACGGCTT‑GCGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCtg                               <  1:354297/140‑1 (MQ=255)                                                                              cTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAaataa                                     >  1:638667/1‑134 (MQ=255)                                                                              cTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAaataa                                     <  2:638667/134‑1 (MQ=255)                                                                              cTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCtg                               >  2:330166/1‑140 (MQ=255)                                                                              cTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCtg                               <  1:101419/140‑1 (MQ=255)                                                                                aCGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCtgtg                             <  1:631209/140‑1 (MQ=255)                                                                                     tt‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCAt                        <  1:831959/140‑1 (MQ=255)                                                                                      t‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCATa                       >  2:403808/1‑140 (MQ=255)                                                                                       tatgggCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCATa                       >  1:60297/4‑140 (MQ=255)                                                                                                            gtAAGGCGTGCACGCCGCATCCGGCTGTCTTGCGATTAACAACGGATATTCAGTTTATTGGCGTGGTAAGCAAATTCCTTGCCAATAAAACTGGACACAAAATAATAGACGTGATCATAACCTTGTTGATAAAGGATTaa  >  2:642002/2‑140 (MQ=255)                                                                                                                                             |                                                                                                           GACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTT‑ACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCATAACCCTCGTGATAACGGATTAA  >  NC_000913/377391‑377636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.