| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,504 | 0 | T | G | 32.2% | 171.2 / 20.1 | 90 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (13/48); new base G (29/0); total (42/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.71e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT > NC_000913/4568369‑4568639 | gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa < 1:747605/140‑1 (MQ=255) ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa < 1:1177620/140‑1 (MQ=255) aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaaag > 1:784894/1‑138 (MQ=255) aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg < 1:891466/140‑1 (MQ=255) aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg < 2:844116/140‑1 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaaggg > 1:1524573/1‑136 (MQ=255) gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAGAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa < 1:133425/140‑1 (MQ=255) gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa < 1:443049/140‑1 (MQ=255) gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa < 2:557233/140‑1 (MQ=255) gACATCGGCATTAAAATCACGTACCACATTAATGATCCC‑GGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCaa > 2:76335/1‑139 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt > 1:739549/1‑140 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg < 2:371104/128‑1 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg > 1:371104/1‑128 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATaaaaaa > 2:1599111/1‑140 (MQ=255) tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa > 1:246729/1‑122 (MQ=255) tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa < 2:246729/122‑1 (MQ=255) tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAaac‑aac > 1:614881/1‑140 (MQ=255) aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTc < 2:666971/140‑1 (MQ=255) aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTcc < 2:1030181/140‑1 (MQ=255) tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCg < 1:1271632/140‑1 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGaa > 1:691066/1‑140 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAA‑AACTCC‑TTTTCCGGAGaa > 2:1003912/1‑140 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAAC‑AAATCC‑CTTTTCGGAGaa > 2:1271632/1‑140 (MQ=255) aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACACGGCAAAAAAAAA‑AACACC‑CTGTCCGGAGaaa > 2:128956/1‑139 (MQ=255) aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAAcccc > 1:170344/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAC‑AACTCC‑TTTTCCGGAGGACCCCAACg > 1:669516/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAACAAAA‑AACTCC‑CTTTCCGGAGAACCCCCACg > 2:320461/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAACGGCATAAAAAACAAAACCC‑TTTTCCGG‑GAAACCCAACg > 2:1332429/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAAcc > 1:1592535/1‑132 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAAcc < 2:1592535/132‑1 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACgggg > 1:735419/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAC‑AACACC‑CTTTCCGGGGAACCCCCACaggg > 2:842342/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAA‑AAAACC‑TTGTCCCGAGAAACCCCACgggg > 2:1229278/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAC‑AACTCC‑CTTTCCGGGGAACCCCCACgggg > 2:1616237/1‑140 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACg < 2:170344/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACg < 1:924205/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACg < 1:1204207/140‑1 (MQ=255) ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAA‑AAATCC‑TTGTCCGGGGAAACCCCACGGGGGAAAAGa > 2:1599444/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAA‑AAATCC‑TTGTCCGGAGAACCCCAACGGGGAAAAAGaa > 2:1470031/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAA‑AAATCC‑TTGTCCGGAGAACCCCAACGGGGGAAACGaa > 2:1476070/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGaaa > 1:996618/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGaaa < 1:128956/140‑1 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAA‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGGAAACGaaa > 2:488890/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAA‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGGAAAAGaaa > 2:472902/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAA‑AACCCC‑TTTTTCCGGGAAACCCAACGGGGGAAAAGaaa > 1:1308806/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAA‑AAAACCTTTGTCGGAGGAACCCCACGGGGGGAAAAGaa > 2:473354/1‑140 (MQ=255) gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCATCGGGGAAAACGAAATTCa < 2:55495/140‑1 (MQ=255) gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCa < 1:1229278/140‑1 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCaa < 1:1003912/140‑1 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAC‑AACTCC‑TTTTCCGGAGAACCCCAACGGGGGAAAAGAAAATCaa > 1:348745/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAC‑AACTCC‑TTTTCCGGAGAACCCCCACGGGGGAAACGAAAATCaa > 2:1204207/1‑140 (MQ=255) tCCGTCGACAGATACGCAGTAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAGCCCCAACGGGGAAAACGAAATTCAAt < 1:1415123/140‑1 (MQ=255) ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATa < 2:1302506/140‑1 (MQ=255) cGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATAc < 1:311385/140‑1 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATAcc < 1:472902/140‑1 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAAAAAAA‑AAACCC‑CTGTCCCGAGAACCCAAACGGGGAAACCAAAATCCataacgt > 2:366138/1‑134 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGGAAACGAAATTCAATACCg > 2:1507678/1‑140 (MQ=255) cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGt < 2:614881/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAGTTCAATACCGTCGGTAATGACGaaa < 1:1616237/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 2:691066/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 2:996618/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAA‑AACTCC‑TTGTCCGGAGAACCCCCACGGGGGAAAAGAAAATCAAAAACCTCGGGAATGACGaaa > 2:1719998/1‑140 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 1:1332429/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAA‑AACTCC‑TTTTCCGGAGAAACCCCACGGGGGAAAAGAAAATCAAAAACGTCGGGAATGACGaaaag > 2:1728036/1‑138 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTg < 1:668849/140‑1 (MQ=255) aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga < 1:1324079/140‑1 (MQ=255) cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag < 2:735419/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 2:784894/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 1:727934/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 1:488890/140‑1 (MQ=255) aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg < 2:739549/140‑1 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAA‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAAAGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAggg > 1:1531421/1‑140 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAA‑AACTCC‑TTTTCCGGGGGACCCCAACGGGGGAAACGAAAATCAATACCGTCGGGAAAGACGAAAAGCAGGGGAGAAagg > 2:1616335/1‑140 (MQ=255) aaCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTGAAAAAAAGGGGCATAACAAAA‑AACCCC‑TTGTCCGGGAAACCCCAAAGGGGAAAAACAAAATCAAAAACCGCGGGAATTAAGAAAAGGAGGGGAGAAgggga > 2:1077231/1‑138 (MQ=255) gagacaggggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc < 1:902623/133‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc < 1:1599444/140‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCCCAAAAAAA‑AAACCC‑CTTTTCGGAGGACCCCCACAGGGAAAAACAAAATCAAAACCGTCCGGAATGAAGAAAAGCCGGGGAGAAAGGGaaa > 2:439423/1‑139 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATAACAAAA‑AAATCC‑TTTTCCCGGGAACCCCCACGGGGAAAAAGAAAATCAAAACCGTCGGGAAAGACGAAAAGCAGGggggaaggggaaa > 2:1558097/1‑139 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga < 1:1476070/140‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAA‑AACTCC‑TTGTCCGGAGAACCCCCACGGGGGAAACGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGTGAGAAGGGGAACGAGAc > 2:1107432/1‑140 (MQ=255) cGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAC‑AACTCC‑TTGTCCGGAGAACCCCCACGGGGGAAAAGAAAATCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACt > 2:71847/1‑140 (MQ=255) aaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATg < 1:439423/140‑1 (MQ=255) aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 1:274108/140‑1 (MQ=255) cGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAACAAAC‑AACTCC‑CTTTCCGGGGAAACCCAACGGGGGAAAAGAAAATCAAAACCGTCGGGAAAGAAGAAAAGCAGGGGAGAAGGGCAACGAGACTGCaaaaagtctc > 2:902623/1‑133 (MQ=255) ggcATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc < 2:198263/140‑1 (MQ=255) gcATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa < 1:1728036/140‑1 (MQ=255) gcATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa < 2:1531421/140‑1 (MQ=255) cATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCAt < 1:1719998/140‑1 (MQ=255) aTGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 2:669516/140‑1 (MQ=255) ggCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 2:1524573/140‑1 (MQ=255) cGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt < 1:1470031/140‑1 (MQ=255) | GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAC‑AACTCC‑TTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT > NC_000913/4568369‑4568639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |