Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,966,153	C→A	intergenic (+63/‑78)	trxA → / → rhoL	thioredoxin 1/rho operon leader peptide

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,966,153	0	C	A	100.0%	282.5 / NA	79	intergenic (+63/‑78)	trxA/rhoL	thioredoxin 1/rho operon leader peptide
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (37/42);  total (37/42)

GGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGC  >  NC_000913/3966021‑3966289                                                                                                                                     |                                                                                                                                         ggcggcAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAgtgt                                                                                                                                   <  1:984302/140‑1 (MQ=255)      cAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACt                                                                                                                              <  2:320231/140‑1 (MQ=255)      cAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACt                                                                                                                              <  1:1523259/140‑1 (MQ=255)      cAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACt                                                                                                                              <  2:1277983/140‑1 (MQ=255)      cAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACt                                                                                                                              <  2:1175018/140‑1 (MQ=255)      cAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACt                                                                                                                              <  2:700072/140‑1 (MQ=255)      cAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACt                                                                                                                              <  2:807826/140‑1 (MQ=255)       aaCCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACtt                                                                                                                             >  2:221723/1‑140 (MQ=255)         ccAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCg                                                                                                                           <  1:1112862/140‑1 (MQ=255)           aaaGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTa                                                                                                                         <  2:263441/140‑1 (MQ=255)                 ggTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAAc                                                                                                                   <  2:123245/140‑1 (MQ=255)                 ggTGCACGGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGGAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATGAGGGTTGACTGCGCATTAGAc                                                                                                                   >  2:864213/1‑140 (MQ=255)                  gTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACt                                                                                                                              >  2:1501084/1‑128 (MQ=255)                  gTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACt                                                                                                                              <  1:1501084/128‑1 (MQ=255)                  gTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACa                                                                                                                  >  2:1429051/1‑140 (MQ=255)                   tGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACAt                                                                                                                 <  1:1022855/140‑1 (MQ=255)                         gTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATAc                                                                                                               >  2:105082/1‑136 (MQ=255)                         gTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATAc                                                                                                               <  1:105082/136‑1 (MQ=255)                         gTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCtta                                                                                                           <  1:966163/140‑1 (MQ=255)                           cTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCttatt                                                                                                         >  2:1489611/1‑140 (MQ=255)                           cTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCttatt                                                                                                         >  2:1747563/1‑140 (MQ=255)                                  tCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTg                                                                                                  <  1:221723/140‑1 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCCTGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  1:910807/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCttatt                                                                                                         <  2:948590/131‑1 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCttatt                                                                                                         >  1:948590/1‑131 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  2:1382188/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  2:1708006/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  2:1255698/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  2:528243/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  2:982898/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  1:1731428/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  1:1567946/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  1:1327461/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGaa                                                                                                >  1:329479/1‑140 (MQ=255)                                    aGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTACTAAGTTTGaa                                                                                                >  1:1123659/1‑140 (MQ=255)                                      ttGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATc                                                                                              <  1:539054/140‑1 (MQ=255)                                      ttGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATc                                                                                              >  1:1467153/1‑140 (MQ=255)                                               ttCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAAttt                                                                                     >  2:505646/1‑140 (MQ=255)                                               ttCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAAttt                                                                                     >  1:306313/1‑140 (MQ=255)                                                tCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGttt                                                                                                   <  2:1485273/125‑1 (MQ=255)                                                tCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGttt                                                                                                   >  1:1485273/1‑125 (MQ=255)                                                tCCTCGACGCTAACCTGGCGGAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTc                                                                                    >  2:1460031/1‑140 (MQ=255)                                                 ccTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTcc                                                                                   <  2:1731428/140‑1 (MQ=255)                                                 ccTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCATCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTcc                                                                                   <  2:1567946/140‑1 (MQ=255)                                                  cTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCa                                                                                  <  1:1708006/140‑1 (MQ=255)                                                   tCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCaa                                                                                 <  1:8409/140‑1 (MQ=255)                                                   tCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCaa                                                                                 <  1:235526/140‑1 (MQ=255)                                                      aCGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGc                                                                              <  2:306313/140‑1 (MQ=255)                                                       cGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCt                                                                             >  1:752705/1‑140 (MQ=255)                                                         cTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTc                                                                           <  1:1429051/140‑1 (MQ=255)                                                            aCCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCg                                                                        >  2:959029/1‑140 (MQ=255)                                                                ggCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGtttt                                                                    <  2:752705/140‑1 (MQ=255)                                                                 gCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTa                                                                   >  1:107533/1‑140 (MQ=255)                                                                      aGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTa                                                              >  2:1139105/1‑140 (MQ=255)                                                                      aGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTa                                                              >  1:1338311/1‑140 (MQ=255)                                                                      aGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTa                                                              <  1:982898/140‑1 (MQ=255)                                                                         gAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAAt                                                           <  2:1163172/140‑1 (MQ=255)                                                                              tCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGaa                                                      <  1:1139105/140‑1 (MQ=255)                                                                                 tGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTg                                                   <  1:792036/140‑1 (MQ=255)                                                                                  gTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGa                                                  >  1:899382/1‑140 (MQ=255)                                                                                    tCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAAc                                                <  1:528243/140‑1 (MQ=255)                                                                                           ccccGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTc                                         >  1:753225/1‑140 (MQ=255)                                                                                             ccGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTg                                       <  1:30174/140‑1 (MQ=255)                                                                                                tCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCt                                    >  2:349543/1‑140 (MQ=255)                                                                                                tCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCt                                    <  1:1382188/140‑1 (MQ=255)                                                                                                tCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCt                                    <  1:1489611/140‑1 (MQ=255)                                                                                                tCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCt                                    >  2:826076/1‑140 (MQ=255)                                                                                                  gCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTACTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCg                                  <  2:1123659/140‑1 (MQ=255)                                                                                                             gACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAAt                         >  1:389642/1‑138 (MQ=255)                                                                                                             gACGCCCGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAAt                         <  2:389642/138‑1 (MQ=255)                                                                                                                  ccGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCtt                  >  1:918268/1‑140 (MQ=255)                                                                                                                  ccGGCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCtt                  <  2:918268/140‑1 (MQ=255)                                                                                                                    ggCGTGAGTCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGt                <  1:1747563/140‑1 (MQ=255)                                                                                                                            tCATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAg        >  2:608063/1‑140 (MQ=255)                                                                                                                             cATGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGt       <  1:1255698/140‑1 (MQ=255)                                                                                                                               tGCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTc     >  1:1326127/1‑140 (MQ=255)                                                                                                                                gCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCt    <  1:608063/140‑1 (MQ=255)                                                                                                                                gCTAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCt    >  2:122899/1‑140 (MQ=255)                                                                                                                                  tAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGc  <  2:910807/140‑1 (MQ=255)                                                                                                                                  tAAATTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGc  <  1:959029/140‑1 (MQ=255)                                                                                                                                     |                                                                                                                                         GGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGC  >  NC_000913/3966021‑3966289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑