Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 501,575 | 0 | A | C | 28.9% | 75.7 / 11.6 | 38 | V555G (GTG→GGG) | ybaL | putative transporter YbaL |
Reads supporting (aligned to +/- strand): ref base A (26/1); new base C (0/11); total (26/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.97e-09 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTC > NC_000913/501436‑501711 | gtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTcacca > 2:1395750/1‑140 (MQ=255) ggTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCt > 1:1019098/1‑140 (MQ=255) aTAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTcacca < 2:1429984/123‑1 (MQ=255) aTAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTcacca > 1:1429984/1‑123 (MQ=255) aTAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGc > 1:4652/1‑140 (MQ=255) aTAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGc > 1:303581/1‑140 (MQ=255) gCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTc > 2:921277/1‑140 (MQ=255) ttgccgccgcATCGGGCATTTCGCTCTCGGTGCGGGGGGGGCCGCGGGCGCGTCTTACAAGCCCTTCGTTTTTTTCAT‑TTTTAACTCCATCAAACCACTGTTCCCCCGGCCCCCCCCCCACCCGCCGGTGGCGTTTCcag < 2:1261011/136‑1 (MQ=255) ttCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCACCGGTGGCGTTTCcag < 2:1063388/140‑1 (MQ=255) ttCACGCCGCACCTGGCATTTGCCTCTCGATGCCTGATGCGCCGCTGGCGCTTCTTATCATGCCTACATTTTTTTCATATTTTACACCCGGC‑ACCCCCCGTTTACCCCGTCACCCCCCCCCCCGCCGGTGGCGTTTCcag < 2:4608/140‑1 (MQ=255) tccccgccgcATCTGGCTTTTGGCTCTCGATGCCTGATGCGCCGCTGGCGCTTTTTATCATGCCTACATATTTTTCATTTTTTACACCCGGC‑AACCACCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCcag < 2:303581/136‑1 (MQ=255) ccACCCCGCATCTGGCATTTGCCCCTCGTGGCTTGAGGCAGCGCGGGCGCGTTTTACCTTCCCAACTTATTTTTTTTATTTTACACCCGCC‑CACCACCTTTCCCCCCGTCCCCACCCCACCCGCCGGTGGCGTTTCcagc < 2:1019098/139‑1 (MQ=255) cACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGCCGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCcagca > 2:1287038/1‑140 (MQ=255) cACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCcagca > 1:1022764/1‑140 (MQ=255) cACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCcagca > 1:1159866/1‑140 (MQ=255) cACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCcagca > 1:1246262/1‑140 (MQ=255) cATCTGGCTTTTGCCTCTCGATGCCTGAGGCGACGCTGGCGCGTTTTATCATGCCTACATTTTTTTAATTTTTTCCACCCGGC‑ACCCCCCGTTTCCCCCGTCCCCCCCCCACCCGCCGGTGGCGTTTCCAGCAGTTCCAg < 2:705911/140‑1 (MQ=255) cATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAg > 1:231304/1‑140 (MQ=255) cATCTGGATTTTGACTCTCGATGCCTGAGGCGGCCGTGGCGCGTTTTATCATCCCTACTTTTTTTTCATTTTTAACACCCGAC‑ACCCCCGGTTCCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAg < 2:419311/140‑1 (MQ=255) tCTGGCATTTGGCTCTCGATGCCTGATGCGCCGCTGGCGCTTTTTATCATCCCTACATTTTTTTCATTTTTTACACCCGGC‑ACCCCCCTTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCa < 2:1309378/140‑1 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCa > 1:1053245/1‑140 (MQ=255) gCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATTTTTTTCATATTTTACACCCGGC‑ACCCCCCGTTCCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGc < 2:443196/140‑1 (MQ=38) gCCTGAGGCGACGCGGGCGCTTCTTATCATGCCTACATTTTTTTCATTTTTTACACCCGGC‑ACCCCCCTTTTCCCCCGCCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGc < 2:564331/140‑1 (MQ=255) ccTGATGCGACGCTGGCGCTTCTTATCATGCCTACATTTTTTTCATTTTTTACATCCGGC‑AACCCCCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCt < 1:517563/140‑1 (MQ=255) ggggggACGCTGGGGCGTCTTACCATCCCAACATATTTTTAATATTTGACATCCGCC‑ACCCACCGTTTCCCCCCTCCCCACCGCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGc < 2:1022764/135‑1 (MQ=255) gATGCGCGGCGGGCGCGTTTTATCATGCCTACATTTTTTTCATATTTTACACCCGGC‑AACCCCCGTTTCCCCCGCCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGc < 2:1159866/140‑1 (MQ=255) gATGCAACGCTGGCGCTTCTTATCATGCCTACATTTTTTTCATTTTTTACATCCGGC‑ACCCACCGTTTCCCCCGTCACCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGc < 2:915624/140‑1 (MQ=255) aTGCGACGCTGGCGCGTCTTATCATGCCTACATTTTTTTCATATTTTACACCCGGC‑ACCCACCGTTTCCCCCGTCACCCCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGcc < 1:921277/140‑1 (MQ=255) aCGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCa > 2:412921/1‑140 (MQ=255) cGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCAc > 2:3841/1‑140 (MQ=255) cGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCAc > 2:740130/1‑140 (MQ=255) tATCATGCCTACATATTTTTCATTTTTTACACCCGCC‑ACCCACCGTTTCCCCCGCCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGca < 2:517484/140‑1 (MQ=255) ttCATCCCTACATTTTTTTAATTTTTTCCACCCGGC‑ACCCCCCTTTTCCCCCGCCCCCCCCTCTCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGcac < 2:1286640/139‑1 (MQ=255) tCATGCCTACATTTTTTTCATATTTTACACCCGGC‑ACCCCCCGTTTCCCCCGCCACCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGcacc < 2:231304/140‑1 (MQ=255) tGCCTACATTTTTTTCATATTTTACATCCGGC‑ACCCCCCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACg < 1:1286598/140‑1 (MQ=255) ccTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGtt > 1:352891/1‑140 (MQ=255) cTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTc > 1:517484/1‑140 (MQ=255) tACATTTTTTTCATTTTTTACACCCGGC‑ACCCCCCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCg < 1:1097296/140‑1 (MQ=255) tACATATTTTTCATATTTTACACCCGGC‑ACCCACCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCg < 1:56010/140‑1 (MQ=255) aCATTTTTTTAATTTTTCACCCCCGCC‑ACCCCCCGTTTCCCCCGCCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCgg < 2:395730/140‑1 (MQ=255) cATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGt > 1:1286640/1‑140 (MQ=255) ttttttCATTTTTTACACCCGCC‑ACCCCCCTTTTACCCCGTCCCCCCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGat < 2:1265861/139‑1 (MQ=255) tttttAATATTTTACACCCGGC‑ACCCCCCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGata < 2:4652/140‑1 (MQ=255) tttCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGAtata > 1:395730/1‑140 (MQ=255) ttCATATTTTACATCCGGC‑AACCACCGTTTATCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATAc > 1:1265861/1‑140 (MQ=255) ttCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATAc > 2:885228/1‑140 (MQ=255) ttACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTc > 1:1314610/1‑140 (MQ=255) tccccccGGC‑ACCCCCCGTTTCCCCCGTCCCCCCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCa < 2:542188/135‑1 (MQ=255) tACATCCGGC‑ACCCCCCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCa < 1:1395750/140‑1 (MQ=255) tACACCCGCC‑ACCCCCCTTTTCCCCCGTCCCCCCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCa < 2:1246262/140‑1 (MQ=255) ggC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCAt > 2:885730/1‑140 (MQ=255) gTTTACCACGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGcgcg > 1:744809/1‑140 (MQ=255) tttACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCgg > 1:131175/1‑140 (MQ=255) ttccccccGTCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCgg < 2:576753/136‑1 (MQ=255) ttcccccGCCACCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCggg < 2:1314610/137‑1 (MQ=255) tccccccGCCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCggg < 2:915275/137‑1 (MQ=255) cccccGCCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCATGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCa < 1:1236123/139‑1 (MQ=255) cccGCCCCCCCCCCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCaat < 1:718138/140‑1 (MQ=255) gTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCaataat > 1:354674/1‑140 (MQ=255) gTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCaataat > 1:1048959/1‑140 (MQ=255) tCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAAtc > 1:232209/1‑140 (MQ=255) accaccTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAAtctc < 2:1048959/140‑1 (MQ=255) | GTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGC‑AACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGCAATAATCTC > NC_000913/501436‑501711 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |