| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,337,667 | C→A | A75A (GCG→GCT) | mlaC ← | intermembrane phospholipid transport system ‑ periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,337,667 | 0 | C | A | 91.7% | 33.0 / ‑2.0 | 12 | A75A (GCG→GCT) | mlaC | intermembrane phospholipid transport system ‑ periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (3/8); total (4/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
ATCGCCAGCGCCTGACCGTAAGCCTGCTTCAGGTACTCACGGAAAGCGGCAAAGTAGGCTTCACGTTGAGCAGGGGTCGCACTCTTGTAATACTGGCCCAGCACCAGCGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAATGGTACGCAGATAATCCGGGTTGGCCCGAATTTGCGGTTGCTCATTCTTCAGGCGATCGAACGTTTTCTGCGCCGCCTCGTCCATC > NC_000913/3337560‑3337802 | aTCGCCAGCGCCTGACCGTAAGCCTGCTTCAGGTACTCACGGAAAGCGGCAAAGTAGGCTTCACGTTGAGCAGGGGTCGCACTCTTGTAATACTGGCCCAGCACCAGAGCACCGGCGTATTTCACCTGTACGTATGgcag < 1:167418/140‑1 (MQ=255)aTCGCCAGCGCCTGACCGTAAGCCTGCTTCAGGTACTCACGGAAAGCGGCAAAGTAGGCTTCACGTTGAGCAGGGGTCGCACTCTTGTAATACTGGCCCAGCACCAGAGCACCGGCGTATTTCACCTGTACGTATGgcag < 2:304313/140‑1 (MQ=255) gACCGTAAGCCTGCTTCAGGTACTCACGGAAAGCGGCAAAGTAGGCTTCACGTTGAGCAGGGGTCGCACTCTTGTAATACTGGCCCAGCACCAGAGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATca > 2:30907/1‑140 (MQ=255) aCCGTAAGCCTGCTTCAGGTACTCACGGAAAGCGGCAAAGTAGGCTTCACGTTGAGCAGGGGTCGCACTCTTGTAATACTGGCCCAGCACCAGAGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATcaa < 2:217322/140‑1 (MQ=255) tAAGCCTGCTTCAGGTACTCACGGAAAGCGGCAAAGTAGGCTTCACGTTGAGCAGGGGTCGCACTCTTGTAATACTGGCCCAGCACCAGAGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAAt < 1:110297/140‑1 (MQ=255) gTAGGCTTCACGTTGAGCAGGGGTCGCACTCTTGTAATACTGGCCCAGCACCAGAGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAATGGTACGCAGATAATCCGGGTTGGCCCGAATTTGCg < 1:55183/140‑1 (MQ=255) ttGAGCAGGGGTCGCACTCTTGTAATACTGGCCCAGCACCAGAGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAATGGTACGCAGATAATCCGGGTTGGCCCGAATTTGCGGTTGCTCAttct < 2:12573/140‑1 (MQ=255) tGGCCCAGCACCAGCGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAATGGTACGCAGATAATCCGGGTTGGCCCGAATTTGCGGTTGCTCATTCTTCAGGCGATCGAACGTTTTCTGcgccgc > 1:131374/1‑140 (MQ=255) ggCCCAGCACCAGAGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAATGGTACGCAGATAATCCGGGTTGGCCCGAATTTGCGGTTGCTCATTCTTCAGGCGATCGAACGTTTTCTGCgccgcc > 2:333337/1‑140 (MQ=255) cccAGCACCAGAGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAATGGTACGCAGATAATCCGGGTTGGCCCGAATTTGCGGTTGCTCATTCTTCAGGCGATCGAACGTTTTCTGCGCCGCCTc > 2:66218/1‑140 (MQ=255) cACCAGAGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAATGGTACGCAGATAATCCGGGTTGGCCCGAATTTGCGGTTGCTCATTCTTCAGGCGATCGAACGTTTTCTGCGCCGCCTCGTCCa < 2:232471/140‑1 (MQ=255) ccAGAGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAATGGTACGCAGATAATCCGGGTTGGCCCGAATTTGCGGTTGCTCATTCTTCAGGCGATCGAACGTTTTCTGCGCCGCCTCGTCCATc < 2:198012/140‑1 (MQ=255) | ATCGCCAGCGCCTGACCGTAAGCCTGCTTCAGGTACTCACGGAAAGCGGCAAAGTAGGCTTCACGTTGAGCAGGGGTCGCACTCTTGTAATACTGGCCCAGCACCAGCGCACCGGCGTATTTCACCTGTACGTATGGCAGCAGTTCCTGATCAACAATGGTACGCAGATAATCCGGGTTGGCCCGAATTTGCGGTTGCTCATTCTTCAGGCGATCGAACGTTTTCTGCGCCGCCTCGTCCATC > NC_000913/3337560‑3337802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |